KEGG   PATHWAY: svi00630
Entry
svi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Saccharomonospora viridis
Class
Metabolism; Carbohydrate metabolism
Pathway map
svi00630  Glyoxylate and dicarboxylate metabolism
svi00630

Module
svi_M00012  Glyoxylate cycle [PATH:svi00630]
svi_M00621  Glycine cleavage system [PATH:svi00630]
svi_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:svi00630]
Other DBs
GO: 0046487 0043648
Organism
Saccharomonospora viridis [GN:svi]
Gene
Svir_28360  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Svir_22620  acyl-CoA synthetase/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]
Svir_36010  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Svir_09650  malate synthase A [KO:K01638] [EC:2.3.3.9]
Svir_28350  malate synthase A [KO:K01638] [EC:2.3.3.9]
Svir_19950  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Svir_33820  citrate synthase [KO:K01647] [EC:2.3.3.1]
Svir_33600  citrate synthase [KO:K01647] [EC:2.3.3.1]
Svir_23930  aconitase [KO:K01681] [EC:4.2.1.3]
Svir_22420  aconitase [KO:K01681] [EC:4.2.1.3]
Svir_18950  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Svir_20230  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Svir_28550  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Svir_38960  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Svir_18000  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Svir_31900  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Svir_30250  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Svir_28560  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Svir_05850  acetyl/propionyl-CoA carboxylase, alpha subunit [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Svir_05890  acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
Svir_05880  hypothetical protein [KO:K27095]
Svir_05670  methylmalonyl-CoA mutase, N-terminal domain/subunit [KO:K01847] [EC:5.4.99.2]
Svir_05680  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Svir_38310  FAD/FMN-dependent dehydrogenase [KO:K00104] [EC:1.1.99.14]
Svir_02320  FAD/FMN-dependent dehydrogenase [KO:K00104] [EC:1.1.99.14]
Svir_30220  FAD/FMN-dependent dehydrogenase [KO:K00104] [EC:1.1.99.14]
Svir_02310  FAD/FMN-dependent dehydrogenase [KO:K11472] [EC:1.1.99.14]
Svir_02300  Fe-S oxidoreductase [KO:K11473] [EC:1.1.99.14]
Svir_20430  catalase [KO:K03781] [EC:1.11.1.6]
Svir_14080  catalase [KO:K03781] [EC:1.11.1.6]
Svir_21110  catalase [KO:K03781] [EC:1.11.1.6]
Svir_12970  lactate dehydrogenase-like oxidoreductase [KO:K00015] [EC:1.1.1.26]
Svir_34060  predicted phosphatase [KO:K01091] [EC:3.1.3.18]
Svir_30410  predicted phosphatase [KO:K01091] [EC:3.1.3.18]
Svir_07430  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Svir_07500  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Svir_13350  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Svir_18800  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Svir_13320  glycine dehydrogenase (decarboxylating) alpha subunit/glycine dehydrogenase (decarboxylating) beta subunit [KO:K00281] [EC:1.4.4.2]
Svir_13330  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Svir_10500  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Svir_11020  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Svir_13340  glycine cleavage system H protein [KO:K02437]
Svir_12960  glycerate kinase [KO:K00865] [EC:2.7.1.165]
Svir_30170  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Svir_27790  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Svir_30580  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Svir_19190  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Svir_19180  formate dehydrogenase beta subunit [KO:K00124]
Svir_18460  hypothetical protein [KO:K01432] [EC:3.5.1.9]
Svir_18880  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Svir_02600  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Svir_11670  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Svir_19680  predicted acetamidase/formamidase [KO:K01455] [EC:3.5.1.49]
Svir_21390  predicted acetamidase/formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
svi00010  Glycolysis / Gluconeogenesis
svi00020  Citrate cycle (TCA cycle)
svi00030  Pentose phosphate pathway
svi00053  Ascorbate and aldarate metabolism
svi00071  Fatty acid degradation
svi00230  Purine metabolism
svi00250  Alanine, aspartate and glutamate metabolism
svi00260  Glycine, serine and threonine metabolism
svi00620  Pyruvate metabolism
svi00710  Carbon fixation by Calvin cycle
svi00750  Vitamin B6 metabolism
svi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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