KEGG   PATHWAY: tbd00970
Entry
tbd00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Thiobacillus denitrificans
Class
Genetic Information Processing; Translation
Pathway map
tbd00970  Aminoacyl-tRNA biosynthesis
tbd00970

Organism
Thiobacillus denitrificans [GN:tbd]
Gene
Tbd_R0044  tRNA-Ala [KO:K14218]
Tbd_R0052  tRNA-Ala [KO:K14218]
Tbd_R0011  tRNA-Ala [KO:K14218]
Tbd_R0039  tRNA-Ala [KO:K14218]
Tbd_R0046  tRNA-Arg [KO:K14219]
Tbd_R0003  tRNA-Arg [KO:K14219]
Tbd_R0017  tRNA-Arg [KO:K14219]
Tbd_R0024  tRNA-Arg [KO:K14219]
Tbd_R0031  tRNA-Asn [KO:K14220]
Tbd_R0032  tRNA-Asp [KO:K14221]
Tbd_R0020  tRNA-Cys [KO:K14222]
Tbd_R0004  tRNA-Gln [KO:K14223]
Tbd_R0045  tRNA-Glu [KO:K14224]
Tbd_R0021  tRNA-Gly [KO:K14225]
Tbd_R0048  tRNA-Gly [KO:K14225]
Tbd_R0006  tRNA-Gly [KO:K14225]
Tbd_R0016  tRNA-His [KO:K14226]
Tbd_R0010  tRNA-Ile [KO:K14227]
Tbd_R0040  tRNA-Ile [KO:K14227]
Tbd_R0028  tRNA-Leu [KO:K14228]
Tbd_R0047  tRNA-Leu [KO:K14228]
Tbd_R0034  tRNA-Leu [KO:K14228]
Tbd_R0019  tRNA-Leu [KO:K14228]
Tbd_R0015  tRNA-Leu [KO:K14228]
Tbd_R0049  tRNA-Lys [KO:K14229]
Tbd_R0042  tRNA-Met [KO:K14230]
Tbd_R0050  tRNA-Met [KO:K14230]
Tbd_R0051  tRNA-Met [KO:K14230]
Tbd_R0001  tRNA-Phe [KO:K14231]
Tbd_R0022  tRNA-Pro [KO:K14232]
Tbd_R0018  tRNA-Pro [KO:K14232]
Tbd_R0027  tRNA-Pro [KO:K14232]
Tbd_R0025  tRNA-Ser [KO:K14233]
Tbd_R0029  tRNA-Ser [KO:K14233]
Tbd_R0030  tRNA-Ser [KO:K14233]
Tbd_R0007  tRNA-Thr [KO:K14234]
Tbd_R0036  tRNA-Thr [KO:K14234]
Tbd_R0043  tRNA-Thr [KO:K14234]
Tbd_R0008  tRNA-Trp [KO:K14235]
Tbd_R0005  tRNA-Tyr [KO:K14236]
Tbd_R0035  tRNA-Val [KO:K14237]
Tbd_R0033  tRNA-Val [KO:K14237]
Tbd_R0026  tRNA-Val [KO:K14237]
Tbd_1734  glutamyl-tRNA synthetase [KO:K01885] [EC:6.1.1.17]
Tbd_0258  glutamyl-tRNA(Gln) amidotransferase A subunit [KO:K02433] [EC:6.3.5.6 6.3.5.7]
Tbd_0257  glutamyl-tRNA(Gln) amidotransferase B subunit [KO:K02434] [EC:6.3.5.6 6.3.5.7]
Tbd_0259  glutamyl-tRNA(Gln) amidotransferase C subunit [KO:K02435] [EC:6.3.5.6 6.3.5.7]
Tbd_0850  glutaminyl-tRNA synthetase [KO:K01886] [EC:6.1.1.18]
Tbd_0553  alanyl-tRNA synthetase, class IIc [KO:K01872] [EC:6.1.1.7]
Tbd_0442  aspartyl-tRNA synthetase [KO:K01876] [EC:6.1.1.12]
Tbd_2348  glycyl-tRNA synthetase, alpha subunit [KO:K01878] [EC:6.1.1.14]
Tbd_2347  glycyl-tRNA synthetase, beta subunit [KO:K01879] [EC:6.1.1.14]
Tbd_1007  threonyl-tRNA synthetase, class IIa [KO:K01868] [EC:6.1.1.3]
Tbd_1229  seryl-tRNA synthetase, class IIa [KO:K01875] [EC:6.1.1.11]
Tbd_1902  Cysteinyl-tRNA synthetase, class Ia [KO:K01883] [EC:6.1.1.16]
Tbd_0860  methionyl-tRNA synthetase, class Ia [KO:K01874] [EC:6.1.1.10]
Tbd_0015  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
Tbd_0577  valyl-tRNA synthetase, class Ia [KO:K01873] [EC:6.1.1.9]
Tbd_2445  leucyl-tRNA synthetase, class Ia [KO:K01869] [EC:6.1.1.4]
Tbd_1857  isoleucyl-tRNA synthetase, class Ia [KO:K01870] [EC:6.1.1.5]
Tbd_0893  lysyl-tRNA synthetase, class-2 [KO:K04567] [EC:6.1.1.6]
Tbd_2782  arginyl-tRNA synthetase, class Ic [KO:K01887] [EC:6.1.1.19]
Tbd_2112  prolyl-tRNA synthetase [KO:K01881] [EC:6.1.1.15]
Tbd_0595  Histidyl-tRNA synthetase, class IIa [KO:K01892] [EC:6.1.1.21]
Tbd_1011  phenylalanyl-tRNA synthetase, alpha subunit [KO:K01889] [EC:6.1.1.20]
Tbd_1012  phenylalanyl-tRNA synthetase, beta subunit [KO:K01890] [EC:6.1.1.20]
Tbd_0459  tyrosyl-tRNA synthetase, class Ib [KO:K01866] [EC:6.1.1.1]
Tbd_1525  tryptophanyl-tRNA synthetase, class Ib [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
tbd00250  Alanine, aspartate and glutamate metabolism
tbd00260  Glycine, serine and threonine metabolism
tbd00270  Cysteine and methionine metabolism
tbd00290  Valine, leucine and isoleucine biosynthesis
tbd00300  Lysine biosynthesis
tbd00330  Arginine and proline metabolism
tbd00340  Histidine metabolism
tbd00380  Tryptophan metabolism
tbd00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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