KEGG   PATHWAY: tdl00020
Entry
tdl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Torulaspora delbrueckii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tdl00020  Citrate cycle (TCA cycle)
tdl00020

Module
tdl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tdl00020]
tdl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tdl00020]
tdl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tdl00020]
tdl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tdl00020]
tdl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tdl00020]
Other DBs
GO: 0006099
Organism
Torulaspora delbrueckii [GN:tdl]
Gene
TDEL_0B05830  TDEL0B05830; hypothetical protein [KO:K01647] [EC:2.3.3.1]
TDEL_0C01210  TDEL0C01210; hypothetical protein [KO:K01647] [EC:2.3.3.1]
TDEL_0E05580  TDEL0E05580; hypothetical protein [KO:K01681] [EC:4.2.1.3]
TDEL_0B06100  TDEL0B06100; hypothetical protein [KO:K00031] [EC:1.1.1.42]
TDEL_0E01160  TDEL0E01160; hypothetical protein [KO:K00031] [EC:1.1.1.42]
TDEL_0C03840  TDEL0C03840; hypothetical protein [KO:K00030] [EC:1.1.1.41]
TDEL_0A03370  TDEL0A03370; hypothetical protein [KO:K00030] [EC:1.1.1.41]
TDEL_0C04540  TDEL0C04540; hypothetical protein [KO:K00164] [EC:1.2.4.2]
TDEL_0F04540  TDEL0F04540; hypothetical protein [KO:K00658] [EC:2.3.1.61]
TDEL_0C00820  TDEL0C00820; hypothetical protein [KO:K00382] [EC:1.8.1.4]
TDEL_0A03420  TDEL0A03420; hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
TDEL_0G01060  TDEL0G01060; hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TDEL_0E03730  TDEL0E03730; hypothetical protein [KO:K00234] [EC:1.3.5.1]
TDEL_0G01780  TDEL0G01780; hypothetical protein [KO:K00235] [EC:1.3.5.1]
TDEL_0A01980  TDEL0A01980; hypothetical protein [KO:K00236]
TDEL_0F05010  TDEL0F05010; hypothetical protein [KO:K00237]
TDEL_0G04580  TDEL0G04580; hypothetical protein [KO:K01679] [EC:4.2.1.2]
TDEL_0G03230  TDEL0G03230; hypothetical protein [KO:K00026] [EC:1.1.1.37]
TDEL_0B07350  TDEL0B07350; hypothetical protein [KO:K00026] [EC:1.1.1.37]
TDEL_0E00560  TDEL0E00560; hypothetical protein [KO:K00026] [EC:1.1.1.37]
TDEL_0G03550  TDEL0G03550; hypothetical protein [KO:K01958] [EC:6.4.1.1]
TDEL_0B02120  TDEL0B02120; hypothetical protein [KO:K01610] [EC:4.1.1.49]
TDEL_0F03730  TDEL0F03730; hypothetical protein [KO:K00161] [EC:1.2.4.1]
TDEL_0G03510  TDEL0G03510; hypothetical protein [KO:K00162] [EC:1.2.4.1]
TDEL_0C04420  TDEL0C04420; hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tdl00010  Glycolysis / Gluconeogenesis
tdl00053  Ascorbate and aldarate metabolism
tdl00061  Fatty acid biosynthesis
tdl00062  Fatty acid elongation
tdl00071  Fatty acid degradation
tdl00190  Oxidative phosphorylation
tdl00220  Arginine biosynthesis
tdl00250  Alanine, aspartate and glutamate metabolism
tdl00280  Valine, leucine and isoleucine degradation
tdl00350  Tyrosine metabolism
tdl00470  D-Amino acid metabolism
tdl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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