KEGG   PATHWAY: tdw04744
Entry
tdw04744                    Pathway                                
Name
Phototransduction - Triplophysa dalaica
Description
Phototransduction is a biochemical process by which the photoreceptor cells generate electrical signals in response to captured photons. The vertebrate cascade starts with the absorption of photons by the photoreceptive pigments, the rhodopsins, which consist of a membrane embedded chromophore, 11-cis-retinal, and a G-protein-coupled receptor, opsin. The photon isomerizes 11-cis-retinal to all-trans-retinal which induces a structural change that activates the opsin. This triggers hydrolysis of cGMP by activating a transducinphosphodiesterase 6 (PDE6) cascade, which results in closure of the cGMP-gated cation channels (CNG) in the plasma membrane and membrane hyperpolarization. The hyperpolarization of the membrane potential of the photoreceptor cell modulates the release of neurotransmitters to downstream cells. Recovery from light involves the deactivation of the light- activated intermediates: photolyzed rhodopsin is phosphorylated by rhodopsin kinase (RK) and subsequently capped off by arrestin; GTP-binding transducin alpha subunit deactivates through a process that is stimulated by RGS9.
Class
Organismal Systems; Sensory system
Pathway map
tdw04744  Phototransduction
tdw04744

Other DBs
GO: 0009586
Organism
Triplophysa dalaica [GN:tdw]
Gene
130424363  green-sensitive opsin-3 [KO:K04250]
130440081  exorh; extra-ocular rhodopsin [KO:K04250]
130440082  rho; rhodopsin [KO:K04250]
130410054  rhol; rhodopsin, like [KO:K04250]
130428338  green-sensitive opsin-2-like [KO:K04250]
130419496  grk1b; rhodopsin kinase GRK1b [KO:K00909] [EC:2.7.11.14]
130413731  grk1a; rhodopsin kinase GRK1 [KO:K00909] [EC:2.7.11.14]
130417903  rhodopsin kinase grk7a [KO:K00909] [EC:2.7.11.14]
130418113  rhodopsin kinase grk7a [KO:K00909] [EC:2.7.11.14]
130438975  rcvrnb; LOW QUALITY PROTEIN: recoverin b [KO:K13764]
130433016  rcvrn2; recoverin 2 [KO:K13764]
130415981  rcvrn3; recoverin 3 [KO:K13764]
130426083  rcvrna; recoverin a [KO:K13764]
130428650  sagb; S-arrestin b [KO:K19627]
130417567  saga; S-arrestin a [KO:K19627]
130424350  gnat1; guanine nucleotide-binding protein G(t) subunit alpha-1 [KO:K04631]
130440310  gnat2; guanine nucleotide-binding protein G(t) subunit alpha-2 [KO:K04631]
130424335  gnb1b; guanine nucleotide binding protein (G protein), beta polypeptide 1b [KO:K04536]
130440012  gnb1a; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [KO:K04536]
130438915  rgs9b; regulator of G-protein signaling 9b isoform X1 [KO:K13765]
130425757  rgs9a; regulator of G-protein signaling 9a [KO:K13765]
130437835  pde6a; LOW QUALITY PROTEIN: rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha [KO:K08718] [EC:3.1.4.35]
130407838  pde6b; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta isoform X1 [KO:K13756] [EC:3.1.4.35]
130438971  pde6gb; phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b [KO:K13759]
130426669  pde6ga; phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a [KO:K13759]
130419367  gucy2d; retinal guanylyl cyclase 1 [KO:K12321] [EC:4.6.1.2]
130428778  gucy2f; LOW QUALITY PROTEIN: retinal guanylyl cyclase 2 [KO:K12322] [EC:4.6.1.2]
130420728  gc2; retinal guanylyl cyclase 2 [KO:K12322] [EC:4.6.1.2]
130429023  guca1c; guanylyl cyclase-activating protein 3 [KO:K08328]
130421502  guca1a; guanylyl cyclase-activating protein 1 [KO:K08328]
130414439  guca1g; guanylate cyclase activator 1g [KO:K08328]
130408370  guca1d; guanylate cyclase activator 1d [KO:K08328]
130409442  guca1b; guanylyl cyclase-activating protein 2 [KO:K08328]
130418049  guanylyl cyclase-activating protein 2-like [KO:K08328]
130429936  sodium/potassium/calcium exchanger 1-like [KO:K13749]
130435385  slc24a1; sodium/potassium/calcium exchanger 1 [KO:K13749]
130436471  calm1a; calmodulin-1a [KO:K02183]
130430146  calml4a; calmodulin-like protein 4a [KO:K02183]
130413745  calml4b; calmodulin-like protein 4 [KO:K02183]
130431483  calm2a; calmodulin 2a (phosphorylase kinase, delta) [KO:K02183]
130425024  calglandulin-like [KO:K02183]
130438977  calm2b; calmodulin 2b, (phosphorylase kinase, delta) isoform X1 [KO:K02183]
130407826  calm3b; calmodulin 3b (phosphorylase kinase, delta) [KO:K02183]
130434444  calm1b; calmodulin-1b [KO:K02183]
130428321  calm3a; calmodulin 3a (phosphorylase kinase, delta) [KO:K02183]
130436736  cnga1a; cyclic nucleotide gated channel subunit alpha 1a [KO:K04948]
130409471  cnga1b; cyclic nucleotide-gated channel rod photoreceptor subunit alpha [KO:K04948]
130435986  cngb1a; LOW QUALITY PROTEIN: cyclic nucleotide-gated cation channel beta-3 [KO:K04952]
130413886  cyclic nucleotide-gated cation channel beta-1-like isoform X1 [KO:K04952]
Compound
C00076  Calcium cation
C00144  GMP
C00238  Potassium cation
C00305  Magnesium cation
C00376  Retinal
C00942  3',5'-Cyclic GMP
C01330  Sodium cation
C02110  11-cis-Retinal
Reference
  Authors
Yau KW, Hardie RC
  Title
Phototransduction motifs and variations.
  Journal
Cell 139:246-64 (2009)
DOI:10.1016/j.cell.2009.09.029
Reference
  Authors
Koch KW, Duda T, Sharma RK
  Title
Photoreceptor specific guanylate cyclases in vertebrate phototransduction.
  Journal
Mol Cell Biochem 230:97-106 (2002)
Reference
PMID:9803480
  Authors
Jindrova H
  Title
Vertebrate phototransduction: activation, recovery, and adaptation.
  Journal
Physiol Res 47:155-68 (1998)
Reference
  Authors
Ebrey T, Koutalos Y
  Title
Vertebrate photoreceptors.
  Journal
Prog Retin Eye Res 20:49-94 (2001)
DOI:10.1016/S1350-9462(00)00014-8
Reference
  Authors
Pepe IM
  Title
Recent advances in our understanding of rhodopsin and phototransduction.
  Journal
Prog Retin Eye Res 20:733-59 (2001)
DOI:10.1016/S1350-9462(01)00013-1
Reference
  Authors
Kramer RH, Molokanova E
  Title
Modulation of cyclic-nucleotide-gated channels and regulation of vertebrate phototransduction.
  Journal
J Exp Biol 204:2921-31 (2001)
Reference
  Authors
Larhammar D, Nordstrom K, Larsson TA
  Title
Evolution of vertebrate rod and cone phototransduction genes.
  Journal
Philos Trans R Soc Lond B Biol Sci 364:2867-80 (2009)
DOI:10.1098/rstb.2009.0077
Reference
  Authors
Dizhoor AM, Olshevskaya EV, Peshenko IV
  Title
Mg2+/Ca2+ cation binding cycle of guanylyl cyclase activating proteins (GCAPs): role in regulation of photoreceptor guanylyl cyclase.
  Journal
Mol Cell Biochem 334:117-24 (2010)
DOI:10.1007/s11010-009-0328-6
Reference
  Authors
Krizaj D, Copenhagen DR
  Title
Calcium regulation in photoreceptors.
  Journal
Front Biosci 7:d2023-44 (2002)
Reference
PMID:9893707
  Authors
Shichida Y, Imai H
  Title
Visual pigment: G-protein-coupled receptor for light signals.
  Journal
Cell Mol Life Sci 54:1299-315 (1998)
DOI:10.1007/s000180050256
Reference
PMID:9419388
  Authors
Pugh EN Jr, Duda T, Sitaramayya A, Sharma RK
  Title
Photoreceptor guanylate cyclases: a review.
  Journal
Biosci Rep 17:429-73 (1997)
DOI:10.1023/A:1027365520442
Reference
  Authors
Luo DG, Xue T, Yau KW
  Title
How vision begins: an odyssey.
  Journal
Proc Natl Acad Sci U S A 105:9855-62 (2008)
DOI:10.1073/pnas.0708405105
Reference
  Authors
Peshenko IV, Dizhoor AM
  Title
Activation and inhibition of photoreceptor guanylyl cyclase by guanylyl cyclase activating protein 1 (GCAP-1): the functional role of Mg2+/Ca2+ exchange in EF-hand domains.
  Journal
J Biol Chem 282:21645-52 (2007)
DOI:10.1074/jbc.M702368200
Reference
  Authors
Ridge KD, Abdulaev NG, Sousa M, Palczewski K
  Title
Phototransduction: crystal clear.
  Journal
Trends Biochem Sci 28:479-87 (2003)
DOI:10.1016/S0968-0004(03)00172-5
Related
pathway
tdw00830  Retinol metabolism
KO pathway
ko04744   
LinkDB

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