KEGG   PATHWAY: tet04144
Entry
tet04144                    Pathway                                
Name
Endocytosis - Tetrahymena thermophila
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
tet04144  Endocytosis
tet04144

Other DBs
GO: 0006897
Organism
Tetrahymena thermophila [GN:tet]
Gene
TTHERM_00471898  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_00047210  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_00600820  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_000310529  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_01125130  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_01075790  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_00149640  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_01457080  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_00467410  phosphatidylinositol 4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TTHERM_00048790  phospholipase d1 [KO:K01115] [EC:3.1.4.4]
TTHERM_00827020  phospholipase d1 [KO:K01115] [EC:3.1.4.4]
TTHERM_00327420  phospholipase d1 [KO:K01115] [EC:3.1.4.4]
TTHERM_00187130  phospholipase d1 [KO:K01115] [EC:3.1.4.4]
TTHERM_00275740  clathrin heavy chain [KO:K04646]
TTHERM_00896070  adaptin amine-terminal region family protein [KO:K11824]
TTHERM_00577030  clathrin adapter protein AP-1, mu subunit [KO:K11826]
TTHERM_00327270  clathrin assembly small subunit protein [KO:K11827]
TTHERM_00576900  senescence-associated protein [KO:K19366]
TTHERM_00649270  senescence-associated protein [KO:K19366]
TTHERM_00856680  senescence-associated protein [KO:K19366]
TTHERM_00077060  hypothetical protein [KO:K23612]
TTHERM_00418590  WH1 domain protein [KO:K23612]
TTHERM_00310470  actin [KO:K17260]
TTHERM_00442100  actin [KO:K18584]
TTHERM_00354830  actin-related protein 2/3 complex subunit 1A/1B [KO:K05757]
TTHERM_00053820  Arp2/3 complex 34 kDa subunit [KO:K05758]
TTHERM_00406600  ARP2/3 complex ARPC3, 21 kDa subunit [KO:K05756]
TTHERM_00857810  ARP2/3 complex 20 kDa subunit (ARPC4) [KO:K05755]
TTHERM_00125640  heat shock 70 kDa protein [KO:K03283]
TTHERM_00558440  heat shock 70 kDa protein [KO:K03283]
TTHERM_01044390  heat shock 70 kDa protein [KO:K03283]
TTHERM_00105110  heat shock 70 kDa protein [KO:K03283]
TTHERM_01080440  heat shock 70 kDa protein [KO:K03283]
TTHERM_00221180  hypothetical protein [KO:K18465]
TTHERM_00145500  hereditary spastic paraplegia protein strumpellin protein [KO:K18464]
TTHERM_00766470  WASH complex WAHD domain protein [KO:K18461]
TTHERM_000113219  F-actin capping protein alpha subunit [KO:K10364]
TTHERM_00784430  F-actin-capping protein subunit beta [KO:K10365]
TTHERM_00047630  vacuolar protein sorting-associated protein [KO:K18467]
TTHERM_01124000  vacuolar protein sorting-associated protein 26 containing protein [KO:K18466]
TTHERM_00295120  vacuolar protein sorting-associated protein 35 containing protein [KO:K18468]
TTHERM_00324420  ubiquitin carboxy-terminal hydrolase [KO:K11839] [EC:3.4.19.12]
TTHERM_00757780  ubiquitin carboxy-terminal hydrolase [KO:K11839] [EC:3.4.19.12]
TTHERM_00445960  ubiquitin carboxy-terminal hydrolase [KO:K11839] [EC:3.4.19.12]
TTHERM_00470810  small guanosine triphosphatase family (GTPase)-like Ras family protein [KO:K07897]
TTHERM_01132890  tumor susceptibility protein, putative [KO:K12183]
TTHERM_00449090  EAP30/Vps36 family protein [KO:K12188]
TTHERM_00155350  vacuolar protein sorting-associated protein [KO:K12190]
TTHERM_00532600  ESCRT-II complex subunit [KO:K12189]
TTHERM_00055970  SNF7 family protein [KO:K12193]
TTHERM_00194250  SNF7 family protein [KO:K12191]
TTHERM_00989490  AAA-type ATPase [KO:K12196]
TTHERM_01128570  AAA family ATPase [KO:K12196]
TTHERM_00670300  AAA family ATPase [KO:K12196]
TTHERM_00036960  vacuolar protein sorting-associated protein 4b [KO:K12196]
TTHERM_00239080  SNF7 family protein [KO:K12197]
TTHERM_00389800  SNF7 family protein [KO:K12197]
TTHERM_00079720  SNF7 family protein [KO:K12198]
TTHERM_00138280  alix V-shaped domain binding to HIV protein [KO:K12200]
TTHERM_00131180  alix V-shaped domain binding to HIV protein [KO:K12200]
TTHERM_000263389  cyclic nucleotide-binding domain protein [KO:K17917]
TTHERM_00155330  PX-SNX-like domain protein [KO:K17917]
TTHERM_00127270  PX-SNX-like domain protein [KO:K17917]
TTHERM_00939140  PX-SNX8-Mvp1p-like protein [KO:K17917]
TTHERM_00502220  PX-SNX8-Mvp1p-like protein [KO:K17917]
TTHERM_00957580  small guanosine triphosphatase family Ras family protein [KO:K07889]
TTHERM_00614720  Rab-family small GTPase [KO:K07889]
TTHERM_00085660  vacuolar protein sorting-associated protein [KO:K12479]
TTHERM_00794230  small guanosine triphosphatase family Ras family protein [KO:K07891]
TTHERM_00711970  small guanosine triphosphatase family (GTPase)-like Ras family protein [KO:K07891]
TTHERM_00207240  hypothetical protein [KO:K07901]
TTHERM_00066880  Rab-family small GTPase [KO:K07901]
TTHERM_00083660  Ras family small GTPase [KO:K07901]
TTHERM_00107200  small GTPase family Rab protein [KO:K07901]
TTHERM_00083670  Ras family small GTPase [KO:K07901]
TTHERM_00126950  Ras family small GTPase [KO:K07901]
TTHERM_00727540  small guanosine triphosphatase family Ras-related in brain (Rab) family protein [KO:K07901]
TTHERM_00431230  small guanosine triphosphatase family Ras family protein [KO:K07901]
TTHERM_00471070  Rab-family small GTPase [KO:K07904]
TTHERM_00941540  small GTPase family Rab protein [KO:K07904]
TTHERM_01099240  Rab-family small GTPase [KO:K07904]
TTHERM_000347989  small guanosine triphosphatase family Ras family protein [KO:K07904]
TTHERM_00497270  ADP-ribosylation factor family protein [KO:K07904]
TTHERM_01085570  small guanosine triphosphatase family Ras-related in brain (Rab) family protein [KO:K07904]
TTHERM_00354630  Rab-family small GTPase [KO:K07905]
TTHERM_00149110  small guanosine triphosphatase family Ras family protein [KO:K07905]
TTHERM_00266230  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_00399210  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_00405390  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_00442160  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_00444350  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_00348290  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_00238980  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_01035660  kinesin motor catalytic domain protein [KO:K10396]
TTHERM_00564250  ARF GTPase activator [KO:K12486]
TTHERM_01285920  GTP-ase activating protein for Arf containing protein [KO:K12489]
TTHERM_00129050  ARF GTPase activator [KO:K12492]
TTHERM_000486239  ARF GTPase activator [KO:K12492]
TTHERM_00158190  ARF GTPase activator [KO:K12493]
TTHERM_00402039  Rab-GTPase-TBC domain protein [KO:K18442]
TTHERM_00895780  Sec7 domain protein [KO:K18442]
TTHERM_00732790  Sec7 domain protein [KO:K18442]
TTHERM_00569500  guanine nucleotide exchange factor [KO:K18442]
TTHERM_01082910  Sec7 domain protein [KO:K18442]
TTHERM_00735240  ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPase family protein [KO:K07937]
TTHERM_00219070  ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPase family protein [KO:K07937]
TTHERM_00499720  soluble GTPase with A role in regulation of membrane traffic and potassium influx, Arl1p protein [KO:K07937]
TTHERM_00696970  ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPase family protein [KO:K07937]
TTHERM_00253467  ADP-ribosylation factor [KO:K07937]
TTHERM_00777040  ADP-ribosylation factor 1 [KO:K07940]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
tet04070  Phosphatidylinositol signaling system
tet04130  SNARE interactions in vesicular transport
KO pathway
ko04144   
LinkDB

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