KEGG   PATHWAY: tgb00020
Entry
tgb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Torulaspora globosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tgb00020  Citrate cycle (TCA cycle)
tgb00020

Module
tgb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tgb00020]
tgb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tgb00020]
tgb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tgb00020]
tgb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tgb00020]
tgb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tgb00020]
Other DBs
GO: 0006099
Organism
Torulaspora globosa [GN:tgb]
Gene
HG536_0B06080  uncharacterized protein [KO:K01647] [EC:2.3.3.1]
HG536_C02985  uncharacterized protein [KO:K01647] [EC:2.3.3.1]
HG536_0E05680  uncharacterized protein [KO:K01681] [EC:4.2.1.3]
HG536_0C02710  uncharacterized protein [KO:K00031] [EC:1.1.1.42]
HG536_0E01750  uncharacterized protein [KO:K00031] [EC:1.1.1.42]
HG536_0A04910  uncharacterized protein [KO:K00030] [EC:1.1.1.41]
HG536_0B03360  uncharacterized protein [KO:K00030] [EC:1.1.1.41]
HG536_0B02950  uncharacterized protein [KO:K00164] [EC:1.2.4.2]
HG536_0C01270  uncharacterized protein [KO:K00658] [EC:2.3.1.61]
HG536_0B06450  uncharacterized protein [KO:K00382] [EC:1.8.1.4]
HG536_0A04960  uncharacterized protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
HG536_0A01040  uncharacterized protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
HG536_0E03840  uncharacterized protein [KO:K00234] [EC:1.3.5.1]
HG536_0A01760  uncharacterized protein [KO:K00235] [EC:1.3.5.1]
HG536_0A03550  uncharacterized protein [KO:K00236]
HG536_0C00780  uncharacterized protein [KO:K00237]
HG536_0H04670  uncharacterized protein [KO:K01679] [EC:4.2.1.2]
HG536_0E02340  uncharacterized protein [KO:K00026] [EC:1.1.1.37]
HG536_0G00440  uncharacterized protein [KO:K00026] [EC:1.1.1.37]
HG536_0A03220  uncharacterized protein [KO:K00026] [EC:1.1.1.37]
HG536_0H03670  uncharacterized protein [KO:K01958] [EC:6.4.1.1]
HG536_0H02150  uncharacterized protein [KO:K01610] [EC:4.1.1.49]
HG536_0C02080  uncharacterized protein [KO:K00161] [EC:1.2.4.1]
HG536_0H03630  uncharacterized protein [KO:K00162] [EC:1.2.4.1]
HG536_0B02830  uncharacterized protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tgb00010  Glycolysis / Gluconeogenesis
tgb00053  Ascorbate and aldarate metabolism
tgb00061  Fatty acid biosynthesis
tgb00062  Fatty acid elongation
tgb00071  Fatty acid degradation
tgb00190  Oxidative phosphorylation
tgb00220  Arginine biosynthesis
tgb00250  Alanine, aspartate and glutamate metabolism
tgb00280  Valine, leucine and isoleucine degradation
tgb00350  Tyrosine metabolism
tgb00470  D-Amino acid metabolism
tgb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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