KEGG   PATHWAY: tic00020
Entry
tic00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermococcus indicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tic00020  Citrate cycle (TCA cycle)
tic00020

Module
tic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tic00020]
tic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tic00020]
Other DBs
GO: 0006099
Organism
Thermococcus indicus [GN:tic]
Gene
FH039_06280  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FH039_06305  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FH039_06795  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FH039_06275  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FH039_06300  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FH039_06790  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FH039_06270  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FH039_06285  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FH039_06310  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
FH039_11700  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
FH039_11675  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
FH039_06555  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
FH039_04305  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
FH039_11800  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
FH039_11805  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
FH039_11775  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
FH039_11795  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tic00010  Glycolysis / Gluconeogenesis
tic00061  Fatty acid biosynthesis
tic00071  Fatty acid degradation
tic00190  Oxidative phosphorylation
tic00220  Arginine biosynthesis
tic00250  Alanine, aspartate and glutamate metabolism
tic00280  Valine, leucine and isoleucine degradation
tic00350  Tyrosine metabolism
tic00470  D-Amino acid metabolism
tic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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