KEGG   PATHWAY: tom00020
Entry
tom00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tateyamaria omphalii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tom00020  Citrate cycle (TCA cycle)
tom00020

Module
tom_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tom00020]
tom_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tom00020]
tom_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tom00020]
Other DBs
GO: 0006099
Organism
Tateyamaria omphalii [GN:tom]
Gene
BWR18_08335  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BWR18_02180  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BWR18_06895  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BWR18_07470  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BWR18_00955  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BWR18_00930  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BWR18_05370  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BWR18_00970  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BWR18_00990  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BWR18_01065  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BWR18_01080  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BWR18_01055  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BWR18_01060  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BWR18_17180  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BWR18_17195  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BWR18_17190  succinate dehydrogenase [KO:K00246]
BWR18_17185  succinate dehydrogenase, cytochrome b556 subunit [KO:K00247]
BWR18_06710  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BWR18_01005  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BWR18_09320  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BWR18_13565  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BWR18_05290  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BWR18_05285  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BWR18_05280  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tom00010  Glycolysis / Gluconeogenesis
tom00053  Ascorbate and aldarate metabolism
tom00061  Fatty acid biosynthesis
tom00071  Fatty acid degradation
tom00190  Oxidative phosphorylation
tom00220  Arginine biosynthesis
tom00250  Alanine, aspartate and glutamate metabolism
tom00280  Valine, leucine and isoleucine degradation
tom00350  Tyrosine metabolism
tom00470  D-Amino acid metabolism
tom00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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