KEGG   PATHWAY: tpf00020
Entry
tpf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tetrapisispora phaffii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tpf00020  Citrate cycle (TCA cycle)
tpf00020

Module
tpf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tpf00020]
tpf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tpf00020]
tpf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tpf00020]
tpf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tpf00020]
tpf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tpf00020]
Other DBs
GO: 0006099
Organism
Tetrapisispora phaffii [GN:tpf]
Gene
TPHA_0P00500  TPHA0P00500; hypothetical protein [KO:K01647] [EC:2.3.3.1]
TPHA_0B03840  TPHA0B03840; hypothetical protein [KO:K01647] [EC:2.3.3.1]
TPHA_0K01970  TPHA0K01970; hypothetical protein [KO:K01681] [EC:4.2.1.3]
TPHA_0B02210  TPHA0B02210; hypothetical protein [KO:K00031] [EC:1.1.1.42]
TPHA_0B03660  TPHA0B03660; hypothetical protein [KO:K00031] [EC:1.1.1.42]
TPHA_0J02770  TPHA0J02770; hypothetical protein [KO:K00030] [EC:1.1.1.41]
TPHA_0E01480  TPHA0E01480; hypothetical protein [KO:K00030] [EC:1.1.1.41]
TPHA_0D01560  TPHA0D01560; hypothetical protein [KO:K00030] [EC:1.1.1.41]
TPHA_0F01330  TPHA0F01330; hypothetical protein [KO:K00164] [EC:1.2.4.2]
TPHA_0A01530  TPHA0A01530; hypothetical protein [KO:K00658] [EC:2.3.1.61]
TPHA_0D00520  TPHA0D00520; hypothetical protein [KO:K00382] [EC:1.8.1.4]
TPHA_0E01470  TPHA0E01470; hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
TPHA_0A05220  TPHA0A05220; hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TPHA_0E02930  TPHA0E02930; hypothetical protein [KO:K00234] [EC:1.3.5.1]
TPHA_0F00210  TPHA0F00210; hypothetical protein [KO:K00235] [EC:1.3.5.1]
TPHA_0G02790  TPHA0G02790; hypothetical protein [KO:K00236]
TPHA_0C02440  TPHA0C02440; hypothetical protein [KO:K00237]
TPHA_0J00270  TPHA0J00270; hypothetical protein [KO:K01679] [EC:4.2.1.2]
TPHA_0L01990  TPHA0L01990; hypothetical protein [KO:K00026] [EC:1.1.1.37]
TPHA_0P01350  TPHA0P01350; hypothetical protein [KO:K00026] [EC:1.1.1.37]
TPHA_0A00460  TPHA0A00460; hypothetical protein [KO:K00026] [EC:1.1.1.37]
TPHA_0G02100  TPHA0G02100; hypothetical protein [KO:K00026] [EC:1.1.1.37]
TPHA_0J01790  TPHA0J01790; hypothetical protein [KO:K01958] [EC:6.4.1.1]
TPHA_0B02650  TPHA0B02650; hypothetical protein [KO:K01958] [EC:6.4.1.1]
TPHA_0E00170  TPHA0E00170; hypothetical protein [KO:K01610] [EC:4.1.1.49]
TPHA_0A01890  TPHA0A01890; hypothetical protein [KO:K00161] [EC:1.2.4.1]
TPHA_0B02640  TPHA0B02640; hypothetical protein [KO:K00162] [EC:1.2.4.1]
TPHA_0F01420  TPHA0F01420; hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tpf00010  Glycolysis / Gluconeogenesis
tpf00053  Ascorbate and aldarate metabolism
tpf00061  Fatty acid biosynthesis
tpf00062  Fatty acid elongation
tpf00071  Fatty acid degradation
tpf00190  Oxidative phosphorylation
tpf00220  Arginine biosynthesis
tpf00250  Alanine, aspartate and glutamate metabolism
tpf00280  Valine, leucine and isoleucine degradation
tpf00350  Tyrosine metabolism
tpf00470  D-Amino acid metabolism
tpf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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