KEGG   PATHWAY: ttc00020
Entry
ttc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thiohalobacter thiocyanaticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ttc00020  Citrate cycle (TCA cycle)
ttc00020

Module
ttc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ttc00020]
ttc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ttc00020]
Other DBs
GO: 0006099
Organism
Thiohalobacter thiocyanaticus [GN:ttc]
Gene
FOKN1_1843  citrate synthase [KO:K01647] [EC:2.3.3.1]
FOKN1_2755  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
FOKN1_1996  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
FOKN1_1658  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FOKN1_1990  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FOKN1_1882  alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
FOKN1_1881  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00658] [EC:2.3.1.61]
FOKN1_2561  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
FOKN1_3046  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
FOKN1_1880  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
FOKN1_2638  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
FOKN1_2639  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
FOKN1_2138  succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FOKN1_2137  succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
FOKN1_2140  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
FOKN1_2139  succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
FOKN1_0817  fumarate lyase [KO:K01679] [EC:4.2.1.2]
FOKN1_1830  biotin carboxylase [KO:K01959] [EC:6.4.1.1]
FOKN1_1828  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
FOKN1_2563  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [KO:K00161] [EC:1.2.4.1]
FOKN1_2562  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [KO:K00162] [EC:1.2.4.1]
FOKN1_1241  pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ttc00010  Glycolysis / Gluconeogenesis
ttc00053  Ascorbate and aldarate metabolism
ttc00061  Fatty acid biosynthesis
ttc00071  Fatty acid degradation
ttc00190  Oxidative phosphorylation
ttc00220  Arginine biosynthesis
ttc00250  Alanine, aspartate and glutamate metabolism
ttc00280  Valine, leucine and isoleucine degradation
ttc00350  Tyrosine metabolism
ttc00470  D-Amino acid metabolism
ttc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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