KEGG   PATHWAY: ttd00020
Entry
ttd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermococcus thioreducens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ttd00020  Citrate cycle (TCA cycle)
ttd00020

Module
ttd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ttd00020]
ttd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ttd00020]
Other DBs
GO: 0006099
Organism
Thermococcus thioreducens [GN:ttd]
Gene
A3L14_07270  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A3L14_05330  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A3L14_05355  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A3L14_07275  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A3L14_05325  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A3L14_05350  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A3L14_05320  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
A3L14_05345  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
A3L14_05360  2-keto acid:ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
A3L14_10500  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
A3L14_10495  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
A3L14_07510  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
A3L14_03550  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
A3L14_10600  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
A3L14_10605  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
A3L14_10575  pyruvate ferredoxin oxidoreductase [KO:K00189] [EC:1.2.7.7 1.2.7.1]
A3L14_10595  porD; pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ttd00010  Glycolysis / Gluconeogenesis
ttd00061  Fatty acid biosynthesis
ttd00071  Fatty acid degradation
ttd00190  Oxidative phosphorylation
ttd00220  Arginine biosynthesis
ttd00250  Alanine, aspartate and glutamate metabolism
ttd00280  Valine, leucine and isoleucine degradation
ttd00350  Tyrosine metabolism
ttd00470  D-Amino acid metabolism
ttd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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