KEGG   PATHWAY: uma00020
Entry
uma00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ustilago maydis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
uma00020  Citrate cycle (TCA cycle)
uma00020

Module
uma_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:uma00020]
uma_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:uma00020]
uma_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:uma00020]
uma_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:uma00020]
uma_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:uma00020]
Other DBs
GO: 0006099
Organism
Ustilago maydis [GN:uma]
Gene
UMAG_01627  putative citrate (Si)-synthase CIT1 [KO:K01647] [EC:2.3.3.1]
UMAG_01005  putative ATP citrate lyase subunit 1 [KO:K01648] [EC:2.3.3.8]
UMAG_02899  putative aconitate hydratase ACO1 [KO:K01681] [EC:4.2.1.3]
UMAG_06111  putative IDP1 - isocitrate dehydrogenase (NADP+), mitochondrial [KO:K00031] [EC:1.1.1.42]
UMAG_01329  putative isocitrate dehydrogenase (NAD(+)) IDH1 [KO:K00030] [EC:1.1.1.41]
UMAG_01328  putative isocitrate dehydrogenase (NAD(+)) IDH2 [KO:K00030] [EC:1.1.1.41]
UMAG_10533  putative alpha-ketoglutarate dehydrogenase KGD1 [KO:K00164] [EC:1.2.4.2]
UMAG_10804  putative alpha-ketoglutarate dehydrogenase KGD2 [KO:K00658] [EC:2.3.1.61]
UMAG_02461  putative dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UMAG_01672  putative succinate--CoA ligase (GDP-forming) subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
UMAG_01903  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
UMAG_11353  putative succinate--CoA ligase (GDP-forming) subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
UMAG_01904  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
UMAG_01172  putative succinate dehydrogenase flavoprotein subunit SDH1 [KO:K00234] [EC:1.3.5.1]
UMAG_00844  succinate dehydrogenase iron-sulfur protein subunit SDH2 [KO:K00235] [EC:1.3.5.1]
UMAG_11744  hypothetical protein [KO:K00236]
UMAG_03845  hypothetical protein [KO:K00237]
UMAG_10787  putative fumarase FUM1 [KO:K01679] [EC:4.2.1.2]
UMAG_00403  putative malate dehydrogenase precursor [KO:K00026] [EC:1.1.1.37]
UMAG_11161  putative malate dehydrogenase precursor [KO:K00026] [EC:1.1.1.37]
UMAG_01054  putative pyruvate carboxylase 1 [KO:K01958] [EC:6.4.1.1]
UMAG_05130  putative phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
UMAG_03854  putative pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha [KO:K00161] [EC:1.2.4.1]
UMAG_06105  putative pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta [KO:K00162] [EC:1.2.4.1]
UMAG_00594  putative dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
uma00010  Glycolysis / Gluconeogenesis
uma00053  Ascorbate and aldarate metabolism
uma00061  Fatty acid biosynthesis
uma00062  Fatty acid elongation
uma00071  Fatty acid degradation
uma00190  Oxidative phosphorylation
uma00220  Arginine biosynthesis
uma00250  Alanine, aspartate and glutamate metabolism
uma00280  Valine, leucine and isoleucine degradation
uma00350  Tyrosine metabolism
uma00470  D-Amino acid metabolism
uma00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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