KEGG   PATHWAY: vai00020
Entry
vai00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Velamenicoccus archaeovorus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vai00020  Citrate cycle (TCA cycle)
vai00020

Module
vai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vai00020]
Other DBs
GO: 0006099
Organism
Candidatus Velamenicoccus archaeovorus [GN:vai]
Gene
BU251_01105  homocitrate synthase [KO:K05942] [EC:2.3.3.3]
BU251_03255  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
BU251_03265  dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BU251_09375  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BU251_06595  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BU251_09370  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BU251_06590  2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BU251_09365  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
BU251_09380  2-oxoglutarate oxidoreductase, delta subunit, putative [KO:K00176] [EC:1.2.7.3]
BU251_01625  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BU251_01630  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
BU251_03260  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BU251_07675  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BU251_00535  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
BU251_00540  pyruvate:ferredoxin oxidoreductae, beta subunit [KO:K00170] [EC:1.2.7.1]
BU251_00525  pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
BU251_00530  pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vai00010  Glycolysis / Gluconeogenesis
vai00061  Fatty acid biosynthesis
vai00190  Oxidative phosphorylation
vai00220  Arginine biosynthesis
vai00250  Alanine, aspartate and glutamate metabolism
vai00280  Valine, leucine and isoleucine degradation
vai00350  Tyrosine metabolism
vai00470  D-Amino acid metabolism
vai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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