KEGG   PATHWAY: vdi00010
Entry
vdi00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Vulcanisaeta distributa
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vdi00010  Glycolysis / Gluconeogenesis
vdi00010

Module
vdi_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vdi00010]
vdi_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vdi00010]
vdi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vdi00010]
vdi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vdi00010]
Other DBs
GO: 0006096 0006094
Organism
Vulcanisaeta distributa [GN:vdi]
Gene
Vdis_2196  ROK family protein [KO:K25026] [EC:2.7.1.2]
Vdis_2389  transcriptional regulator, RpiR family [KO:K15916] [EC:5.3.1.9 5.3.1.8]
Vdis_0368  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Vdis_0369  Fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
Vdis_1639  fructose-bisphosphate aldolase; D-fructose 1,6-bisphosphatase [KO:K01622] [EC:4.1.2.13 3.1.3.11]
Vdis_1254  triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
Vdis_1977  glyceraldehyde-3-phosphate dehydrogenase, type II [KO:K00150] [EC:1.2.1.59]
Vdis_1978  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Vdis_0318  Phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
Vdis_1202  phosphonopyruvate decarboxylase-related protein [KO:K15635] [EC:5.4.2.12]
Vdis_0734  Phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Vdis_0717  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Vdis_0230  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
Vdis_0063  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Vdis_0523  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Vdis_0694  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Vdis_1937  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Vdis_1987  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Vdis_0524  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Vdis_0695  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Vdis_1986  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Vdis_1938  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Vdis_1935  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Vdis_0692  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Vdis_1989  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Vdis_1988  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Vdis_1936  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Vdis_0522  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00171] [EC:1.2.7.1]
Vdis_0693  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Vdis_0392  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Vdis_1454  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Vdis_2276  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Vdis_1455  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vdis_1591  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vdis_1059  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vdis_2277  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vdis_0262  Alcohol dehydrogenase GroES domain protein [KO:K13953] [EC:1.1.1.1]
Vdis_1136  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Vdis_0350  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Vdis_1529  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Vdis_2325  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Vdis_2378  CoA-binding domain protein [KO:K01905] [EC:6.2.1.13]
Vdis_2379  ATP-grasp domain protein [KO:K22224] [EC:6.2.1.13]
Vdis_0634  CoA-binding domain protein [KO:K24012] [EC:6.2.1.13]
Vdis_2065  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Vdis_2526  Aldehyde ferredoxin oxidoreductase [KO:K11389] [EC:1.2.7.6]
Vdis_2334  Aldehyde Dehydrogenase [KO:K18978] [EC:1.2.1.90]
Vdis_0741  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vdi00020  Citrate cycle (TCA cycle)
vdi00030  Pentose phosphate pathway
vdi00500  Starch and sucrose metabolism
vdi00620  Pyruvate metabolism
vdi00640  Propanoate metabolism
vdi00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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