KEGG   PATHWAY: ver00630
Entry
ver00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Verrucosispora sp. NA02020
Class
Metabolism; Carbohydrate metabolism
Pathway map
ver00630  Glyoxylate and dicarboxylate metabolism
ver00630

Module
ver_M00012  Glyoxylate cycle [PATH:ver00630]
ver_M00621  Glycine cleavage system [PATH:ver00630]
Other DBs
GO: 0046487 0043648
Organism
Verrucosispora sp. NA02020 [GN:ver]
Gene
HUT12_16260  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
HUT12_02590  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
HUT12_16265  malate synthase A [KO:K01638] [EC:2.3.3.9]
HUT12_27755  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HUT12_03060  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
HUT12_20105  citrate synthase [KO:K01647] [EC:2.3.3.1]
HUT12_22440  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HUT12_00875  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HUT12_01580  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HUT12_04705  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HUT12_05515  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HUT12_12765  thiolase family protein [KO:K00626] [EC:2.3.1.9]
HUT12_19085  steroid 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
HUT12_26595  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HUT12_26600  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
HUT12_04370  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
HUT12_04435  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
HUT12_04300  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
HUT12_29815  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
HUT12_01465  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
HUT12_02170  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
HUT12_16330  catalase [KO:K03781] [EC:1.11.1.6]
HUT12_02990  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
HUT12_14300  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
HUT12_08155  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
HUT12_11695  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
HUT12_25020  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
HUT12_25025  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
HUT12_25070  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
HUT12_20525  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HUT12_26780  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HUT12_18250  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
HUT12_24860  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
HUT12_24875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUT12_18295  gcvH; glycine cleavage system protein GcvH [KO:K02437]
HUT12_24785  glycerate kinase [KO:K00865] [EC:2.7.1.165]
HUT12_16225  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HUT12_18650  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HUT12_27150  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
HUT12_18390  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
HUT12_18385  4Fe-4S dicluster domain-containing protein [KO:K00124]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ver00010  Glycolysis / Gluconeogenesis
ver00020  Citrate cycle (TCA cycle)
ver00030  Pentose phosphate pathway
ver00053  Ascorbate and aldarate metabolism
ver00071  Fatty acid degradation
ver00230  Purine metabolism
ver00250  Alanine, aspartate and glutamate metabolism
ver00260  Glycine, serine and threonine metabolism
ver00620  Pyruvate metabolism
ver00710  Carbon fixation by Calvin cycle
ver00750  Vitamin B6 metabolism
ver00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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