KEGG   PATHWAY: vmo00020
Entry
vmo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vulcanisaeta moutnovskia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vmo00020  Citrate cycle (TCA cycle)
vmo00020

Module
vmo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vmo00020]
vmo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vmo00020]
vmo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vmo00020]
vmo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vmo00020]
vmo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vmo00020]
Other DBs
GO: 0006099
Organism
Vulcanisaeta moutnovskia [GN:vmo]
Gene
VMUT_0282  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
VMUT_1536  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
VMUT_2093  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
VMUT_0434  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
VMUT_0947  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
VMUT_0638  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
VMUT_0033  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
VMUT_0152  2-oxoglutarate:ferredoxin oxidoreductase (KGOR), alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
VMUT_1234  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
VMUT_1899  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
VMUT_0637  2-ketoglutarate ferredoxin oxidoreductase (KGOR), subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
VMUT_0032  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
VMUT_0151  2-oxoglutarate:ferredoxin oxidoreductase (KGOR), beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
VMUT_0636  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit gamma [KO:K00177] [EC:1.2.7.3]
VMUT_0030  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit gamma [KO:K00177] [EC:1.2.7.3]
VMUT_0031  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit delta [KO:K00176] [EC:1.2.7.3]
VMUT_1961  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
VMUT_1962  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
VMUT_0254  succinate dehydrogenase and fumarate reductase, flavoprotein subunit (alpha) [KO:K00239] [EC:1.3.5.1]
VMUT_1328  succinate dehydrogenase and fumarate reductase, iron-sulfur protein subunit (beta) [KO:K00240] [EC:1.3.5.1]
VMUT_1329  succinate dehydrogenase and fumarate reductase, cytochrome b subunit (gamma) [KO:K00241]
VMUT_1330  hypothetical protein [KO:K00242]
VMUT_0608  Fumarase (fumarate hydratase) class I, subunit alpha [KO:K01677] [EC:4.2.1.2]
VMUT_0607  Fumarase (fumarate hydratase) class I, subunit beta [KO:K01678] [EC:4.2.1.2]
VMUT_0204  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VMUT_1588  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
VMUT_0349  Pyruvate:ferredoxin oxidoreductase (POR), alpha subunit [KO:K00169] [EC:1.2.7.1]
VMUT_0398  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR), alpha subunit [KO:K00169] [EC:1.2.7.1]
VMUT_1198  Pyruvate:ferredoxin oxidoreductase (POR), subunit alpha [KO:K00169] [EC:1.2.7.1]
VMUT_0397  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR), beta subunit [KO:K00170] [EC:1.2.7.1]
VMUT_1199  Pyruvate:ferredoxin oxidoreductase (POR), subunit beta [KO:K00170] [EC:1.2.7.1]
VMUT_0350  Pyruvate:ferredoxin oxidoreductase (POR), beta subunit [KO:K00170] [EC:1.2.7.1]
VMUT_0347  Pyruvate:ferredoxin oxidoreductase (POR), gamma subunit [KO:K00172] [EC:1.2.7.1]
VMUT_0400  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR), gamma subunit [KO:K00172] [EC:1.2.7.1]
VMUT_0399  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR),delta subunit [KO:K00171] [EC:1.2.7.1]
VMUT_0348  Pyruvate:ferredoxin oxidoreductase (POR), delta subunit [KO:K00171] [EC:1.2.7.1]
VMUT_1197  Pyruvate:ferredoxin oxidoreductase (POR), subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vmo00010  Glycolysis / Gluconeogenesis
vmo00053  Ascorbate and aldarate metabolism
vmo00061  Fatty acid biosynthesis
vmo00071  Fatty acid degradation
vmo00190  Oxidative phosphorylation
vmo00220  Arginine biosynthesis
vmo00250  Alanine, aspartate and glutamate metabolism
vmo00280  Valine, leucine and isoleucine degradation
vmo00350  Tyrosine metabolism
vmo00470  D-Amino acid metabolism
vmo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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