KEGG   PATHWAY: vni00630
Entry
vni00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Vibrio nigripulchritudo
Class
Metabolism; Carbohydrate metabolism
Pathway map
vni00630  Glyoxylate and dicarboxylate metabolism
vni00630

Module
vni_M00012  Glyoxylate cycle [PATH:vni00630]
vni_M00621  Glycine cleavage system [PATH:vni00630]
Other DBs
GO: 0046487 0043648
Organism
Vibrio nigripulchritudo [GN:vni]
Gene
VIBNI_A1521  aceA; Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
VIBNI_A3298  acs; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
VIBNI_A1520  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
VIBNI_B1440  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
VIBNI_A2929  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VIBNI_A2569  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
VIBNI_A2842  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VIBNI_B0465  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
VIBNI_A1234  phbA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
VIBNI_B1306  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
VIBNI_B1307  phaB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
VIBNI_B0575  katB; Catalase [KO:K03781] [EC:1.11.1.6]
VIBNI_B0104  katA; Catalase [KO:K03781] [EC:1.11.1.6]
VIBNI_A0442  hprA; Glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
VIBNI_A2935  hprA; Glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
VIBNI_B0501  putative phosphatase [KO:K01091] [EC:3.1.3.18]
VIBNI_A3575  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
VIBNI_A1505  putative Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
VIBNI_A3034  Alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
VIBNI_A1348  putative Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
VIBNI_A3478  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
VIBNI_B0816  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
VIBNI_A2725  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
VIBNI_B0814  gcvP; Glycine dehydrogenase [decarboxylating] [KO:K00281] [EC:1.4.4.2]
VIBNI_B0818  GDCST; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
VIBNI_A0183  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
VIBNI_A3589  putative MERCURIC REDUCTASE [KO:K00382] [EC:1.8.1.4]
VIBNI_B0815  gcvH; Glycine cleavage system H protein [KO:K02437]
VIBNI_A0525  glxK; glycerate kinase I [KO:K00865] [EC:2.7.1.165]
VIBNI_B2048  aldA; Lactaldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
VIBNI_A0958  Tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
VIBNI_B0436  putative aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
VIBNI_B2050  eda; KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase] [KO:K01625] [EC:4.1.2.14 4.1.3.42]
VIBNI_B1783  eda; 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
VIBNI_A1716  fdhA; Formate dehydrogenase subunit A [KO:K00123] [EC:1.17.1.9]
VIBNI_A1717  fdhB; formate dehydrogenase, iron-sulfur subunit [KO:K00124]
VIBNI_A1718  putative Formate dehydrogenase-O gamma subunit [KO:K00127]
VIBNI_A2534  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
vni00010  Glycolysis / Gluconeogenesis
vni00020  Citrate cycle (TCA cycle)
vni00030  Pentose phosphate pathway
vni00053  Ascorbate and aldarate metabolism
vni00071  Fatty acid degradation
vni00230  Purine metabolism
vni00250  Alanine, aspartate and glutamate metabolism
vni00260  Glycine, serine and threonine metabolism
vni00620  Pyruvate metabolism
vni00710  Carbon fixation by Calvin cycle
vni00750  Vitamin B6 metabolism
vni00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system