KEGG   PATHWAY: vra03008
Entry
vra03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Vigna radiata (mung bean)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
vra03008  Ribosome biogenesis in eukaryotes
vra03008

Organism
Vigna radiata (mung bean) [GN:vra]
Gene
106777885  casein kinase II subunit beta-1 [KO:K03115]
106769384  putative casein kinase II subunit beta-4 [KO:K03115]
106765476  putative casein kinase II subunit beta-4 isoform X1 [KO:K03115]
106768795  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
106768692  casein kinase II subunit alpha-2 [KO:K03097] [EC:2.7.11.1]
106777936  casein kinase II subunit alpha-2 [KO:K03097] [EC:2.7.11.1]
106777976  nucleolar protein 6 isoform X1 [KO:K14544]
106758698  uncharacterized protein LOC106758698 [KO:K14545]
106773558  WD repeat-containing protein 43 isoform X1 [KO:K14546]
106769477  WD repeat-containing protein 43 [KO:K14546]
106765128  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
106769809  protein SLOW WALKER 1 [KO:K14549]
106764728  uncharacterized protein At3g06530 isoform X1 [KO:K14550]
106769022  WD repeat-containing protein 75 [KO:K14552]
106775084  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
106775494  WD repeat-containing protein 36 [KO:K14554]
106753328  transducin beta-like protein 3 isoform X1 [KO:K14555]
106757808  WD repeat-containing protein 3 [KO:K14556]
106768607  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
106762612  periodic tryptophan protein 2 [KO:K14558]
106753316  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
106769951  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
106761035  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
106754363  mediator of RNA polymerase II transcription subunit 36a isoform X1 [KO:K14563] [EC:2.1.1.-]
106763839  mediator of RNA polymerase II transcription subunit 36a [KO:K14563] [EC:2.1.1.-]
106762769  nucleolar protein 56 [KO:K14564]
106756457  probable nucleolar protein 5-2 [KO:K14565]
106767391  NHP2-like protein 1 [KO:K12845]
106764051  NHP2-like protein 1 [KO:K12845]
106776098  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
106775396  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
106753849  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [KO:K11128]
106757308  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
106753116  rRNA-processing protein FCF1 homolog [KO:K14566]
106772095  uncharacterized protein C57A7.06 [KO:K14567]
106757705  uncharacterized protein C57A7.06 [KO:K14567]
106756151  ribosomal RNA small subunit methyltransferase nep-1 [KO:K14568] [EC:2.1.1.260]
106756255  ribosome biogenesis protein BMS1 homolog [KO:K14569]
106770438  RNA cytidine acetyltransferase 1 [KO:K14521] [EC:2.3.1.-]
106766976  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
106771044  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
106752928  uncharacterized protein LOC106752928 [KO:K01164] [EC:3.1.26.5]
106777562  LOW QUALITY PROTEIN: uncharacterized protein LOC106777562 [KO:K03538] [EC:3.1.26.5]
106764187  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
106753508  uncharacterized protein LOC106753508 [KO:K03539] [EC:3.1.26.5]
106759678  uncharacterized protein LOC106759678 isoform X1 [KO:K03539] [EC:3.1.26.5]
106768145  small RNA degrading nuclease 1 isoform X1 [KO:K14570] [EC:3.1.-.-]
106768146  small RNA degrading nuclease 1-like [KO:K14570] [EC:3.1.-.-]
106764031  small RNA degrading nuclease 5 [KO:K14570] [EC:3.1.-.-]
106764305  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
106764841  5'-3' exoribonuclease 3 isoform X2 [KO:K12619] [EC:3.1.13.-]
106756336  nucleolar GTP-binding protein 1 [KO:K06943]
106762829  nucleolar GTP-binding protein 1 [KO:K06943]
106754640  nuclear/nucleolar GTPase 2-like [KO:K14537]
106769656  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
106776220  cell division control protein 48 homolog C [KO:K14571]
106769619  LOW QUALITY PROTEIN: midasin-like [KO:K14572]
106773952  LOW QUALITY PROTEIN: midasin-like [KO:K14572]
106756630  RNA-binding protein 28 isoform X1 [KO:K14573]
106769442  uncharacterized protein LOC106769442 [KO:K11883]
106764632  GTP-binding nuclear protein Ran-3-like [KO:K07936]
106761894  GTP-binding nuclear protein Ran-3-like [KO:K07936]
106761895  GTP-binding nuclear protein Ran-3 [KO:K07936]
106768487  GTP-binding nuclear protein Ran-3 [KO:K07936]
106779030  protein EXPORTIN 1A [KO:K14290]
106777811  protein EXPORTIN 1A [KO:K14290]
106772899  60S ribosomal export protein NMD3 [KO:K07562]
106756700  eukaryotic translation initiation factor 6-2 [KO:K03264]
106771084  eukaryotic translation initiation factor 6-2-like [KO:K03264]
106754581  ribosome maturation protein SBDS [KO:K14574]
106764671  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
106756497  GTPase LSG1-2 [KO:K14539] [EC:3.6.1.-]
106754633  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
106778559  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
106759586  serine/threonine-protein kinase rio1 [KO:K07178] [EC:2.7.11.1]
106759111  serine/threonine-protein kinase rio1-like [KO:K07178] [EC:2.7.11.1]
106756796  serine/threonine-protein kinase rio2-like [KO:K07179] [EC:2.7.11.1]
106754407  LOW QUALITY PROTEIN: serine/threonine-protein kinase rio2-like [KO:K07179] [EC:2.7.11.1]
106759782  serine/threonine-protein kinase rio2-like [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
vra03010  Ribosome
KO pathway
ko03008   
LinkDB

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