KEGG   PATHWAY: vra03430
Entry
vra03430                    Pathway                                
Name
Mismatch repair - Vigna radiata (mung bean)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
vra03430  Mismatch repair
vra03430

Other DBs
GO: 0006298
Organism
Vigna radiata (mung bean) [GN:vra]
Gene
106768982  uncharacterized protein LOC106768982 isoform X1 [KO:K07456]
106767192  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
106769770  DNA mismatch repair protein PMS1 isoform X2 [KO:K10858]
106762345  DNA mismatch repair protein MLH1 isoform X4 [KO:K08734]
106758070  DNA mismatch repair protein MSH7 [KO:K08737]
106757872  DNA mismatch repair protein MSH6 [KO:K08737]
106769444  DNA mismatch repair protein MSH2 [KO:K08735]
106769933  DNA mismatch repair protein MSH3 [KO:K08736]
106777687  DNA mismatch repair protein MLH3 isoform X2 [KO:K08739]
106756431  replication factor C subunit 1 isoform X1 [KO:K10754]
106761082  replication factor C subunit 2 [KO:K10755]
106767223  replication factor C subunit 2 [KO:K10755]
106760512  uncharacterized protein LOC106760512 isoform X1 [KO:K10756]
106761133  replication factor C subunit 5 [KO:K10756]
106765093  replication factor C subunit 3 [KO:K10756]
106776657  uncharacterized protein LOC106776657 [KO:K10756]
106775089  proliferating cell nuclear antigen [KO:K04802]
106767339  exonuclease 1 isoform X1 [KO:K10746] [EC:3.1.-.-]
106767024  exonuclease 1 isoform X3 [KO:K10746] [EC:3.1.-.-]
106778052  replication protein A 70 kDa DNA-binding subunit E [KO:K07466]
106762300  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
106765514  replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
106764059  replication protein A 32 kDa subunit A isoform X1 [KO:K10739]
106767348  replication protein A 32 kDa subunit A [KO:K10739]
106771438  replication protein A 14 kDa subunit B [KO:K10740]
106757309  replication protein A 14 kDa subunit B isoform X1 [KO:K10740]
106779647  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
106756798  DNA polymerase delta small subunit isoform X1 [KO:K02328]
106778130  uncharacterized protein LOC106778130 [KO:K03504]
106752850  uncharacterized protein LOC106752850 [KO:K03505]
106756275  DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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