KEGG   PATHWAY: vso00020
Entry
vso00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vulcanisaeta souniana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vso00020  Citrate cycle (TCA cycle)
vso00020

Module
vso_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vso00020]
vso_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vso00020]
vso_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vso00020]
vso_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vso00020]
vso_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vso00020]
Other DBs
GO: 0006099
Organism
Vulcanisaeta souniana [GN:vso]
Gene
Vsou_02480  citrate synthase [KO:K01647] [EC:2.3.3.1]
Vsou_14240  HMGL-related enzyme [KO:K05942] [EC:2.3.3.3]
Vsou_18950  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Vsou_26180  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Vsou_18880  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Vsou_07930  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Vsou_20190  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Vsou_22330  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Vsou_26320  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Vsou_07940  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vsou_09810  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vsou_20180  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vsou_22340  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Vsou_22350  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Vsou_07950  hypothetical protein [KO:K00176] [EC:1.2.7.3]
Vsou_22320  hypothetical protein [KO:K00176] [EC:1.2.7.3]
Vsou_09450  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Vsou_09440  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Vsou_02100  fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Vsou_16410  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Vsou_16400  hypothetical protein [KO:K00241]
Vsou_16390  hypothetical protein [KO:K00242]
Vsou_22670  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
Vsou_22680  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
Vsou_05810  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Vsou_04380  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Vsou_13740  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Vsou_06540  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
Vsou_16120  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
Vsou_03320  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
Vsou_05200  oxalate oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
Vsou_06530  thiamine pyrophosphate-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Vsou_16110  thiamine pyrophosphate-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Vsou_03330  2-ketoisovalerate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Vsou_05210  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
Vsou_16140  pyruvate/ketoisovalerate oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
Vsou_03300  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
Vsou_06560  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
Vsou_06550  pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Vsou_16130  pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Vsou_03310  ferredoxin [KO:K00171] [EC:1.2.7.1]
Vsou_05190  oxalate oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vso00010  Glycolysis / Gluconeogenesis
vso00053  Ascorbate and aldarate metabolism
vso00061  Fatty acid biosynthesis
vso00071  Fatty acid degradation
vso00190  Oxidative phosphorylation
vso00220  Arginine biosynthesis
vso00250  Alanine, aspartate and glutamate metabolism
vso00280  Valine, leucine and isoleucine degradation
vso00350  Tyrosine metabolism
vso00470  D-Amino acid metabolism
vso00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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