KEGG   PATHWAY: vsp02010
Entry
vsp02010                    Pathway                                
Name
ABC transporters - Vibrio atlanticus
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
vsp02010  ABC transporters
vsp02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Vibrio atlanticus [GN:vsp]
Gene
VS_0007  [KO:K16963]
VS_0008  [KO:K16962]
VS_0009  [KO:K16961]
VS_0466  [KO:K06858]
VS_0581  [KO:K02040]
VS_0585  [KO:K02037]
VS_0586  [KO:K02038]
VS_0587  [KO:K02036] [EC:7.3.2.1]
VS_0849  [KO:K02193] [EC:7.6.2.5]
VS_0850  [KO:K02194]
VS_0852  [KO:K02195]
VS_0853  [KO:K02196]
VS_0875  [KO:K17315]
VS_0876  [KO:K17316]
VS_0877  [KO:K17317]
VS_0878  [KO:K10112] [EC:7.5.2.-]
VS_0990  [KO:K15580]
VS_0991  [KO:K15581]
VS_0992  [KO:K15582]
VS_0993  [KO:K15583]
VS_0994  [KO:K10823]
VS_1054  [KO:K10025] [EC:7.4.2.1]
VS_1055  [KO:K10022]
VS_1056  [KO:K10024]
VS_1057  [KO:K10023]
VS_1123  viuP; ABC transporter: Substrate-binding protein precursor (BP); Iron-siderophore uptake (Vibriobactin) [KO:K23185]
VS_1124  viuD; ABC transporter: Transmembrane protein; Iron-siderophore uptake, Vibriobactin [KO:K23186]
VS_1125  viuG; ABC transporter: permease protein; Iron-siderophore uptake, Vibriobactin [KO:K23187]
VS_1126  viuC; ABC transporter: ATP-binding protein; Iron-siderophore uptake [KO:K23188]
VS_1153  [KO:K10022]
VS_1179  [KO:K02000] [EC:7.6.2.9]
VS_1180  [KO:K02001]
VS_1181  [KO:K02002]
VS_1184  [KO:K16012]
VS_1185  [KO:K16013]
VS_1400  [KO:K09972] [EC:7.4.2.1]
VS_1401  [KO:K09971]
VS_1402  [KO:K09970]
VS_1403  [KO:K09969]
VS_1474  [KO:K11072] [EC:7.6.2.11]
VS_1475  [KO:K11071]
VS_1476  [KO:K11070]
VS_1477  [KO:K11069]
VS_1478  [KO:K11069]
VS_1499  [KO:K05772]
VS_1500  [KO:K05773]
VS_1501  [KO:K06857] [EC:7.3.2.6]
VS_1523  [KO:K02002]
VS_1524  [KO:K02001]
VS_1525  [KO:K02000] [EC:7.6.2.9]
VS_1561  artM; ABC transporter: transmembrane protein; Arginine uptake [KO:K09998]
VS_1562  [KO:K09999]
VS_1563  [KO:K09997]
VS_1564  [KO:K10000] [EC:7.4.2.1]
VS_1695  [KO:K06074] [EC:7.6.2.8]
VS_1696  [KO:K06073]
VS_1993  [KO:K19226]
VS_1994  [KO:K19227]
VS_1995  [KO:K19228]
VS_1996  [KO:K19229]
VS_1997  [KO:K19230]
VS_2062  [KO:K11085] [EC:7.5.2.6]
VS_2065  [KO:K09808]
VS_2066  [KO:K09810] [EC:7.6.2.-]
VS_2067  [KO:K09808]
VS_2112  [KO:K10829] [EC:7.2.2.16]
VS_2113  [KO:K23227]
VS_2114  [KO:K23228]
VS_2237  [KO:K09815]
VS_2238  [KO:K09817] [EC:7.2.2.20]
VS_2239  [KO:K09816]
VS_2382  [KO:K02071]
VS_2383  [KO:K02072]
VS_2384  [KO:K02073]
VS_2516  [KO:K02010] [EC:7.2.2.7]
VS_2517  [KO:K02011]
VS_2518  [KO:K02012]
VS_2590  [KO:K15770]
VS_2591  [KO:K15771]
VS_2592  [KO:K15772]
VS_2650  [KO:K17315]
VS_2727  [KO:K11720]
VS_2728  [KO:K07091]
VS_2746  [KO:K07122]
VS_2747  [KO:K07323]
VS_2748  [KO:K02067]
VS_2749  [KO:K02066]
VS_2750  [KO:K02065]
VS_2756  [KO:K06861] [EC:7.5.2.5]
VS_2765  [KO:K02062] [EC:7.6.2.15]
VS_2766  [KO:K02063]
VS_2767  [KO:K02064]
VS_3019  [KO:K09811]
VS_3020  [KO:K09812]
VS_II0005  [KO:K12541]
VS_II0026  [KO:K18893]
VS_II0059  [KO:K02002]
VS_II0060  [KO:K02001]
VS_II0061  [KO:K02000] [EC:7.6.2.9]
VS_II0162  [KO:K10108]
VS_II0187  [KO:K16785]
VS_II0205  [KO:K02040]
VS_II0206  [KO:K02037]
VS_II0207  [KO:K02038]
VS_II0208  [KO:K02036] [EC:7.3.2.1]
VS_II0219  [KO:K10111] [EC:7.5.2.-]
VS_II0220  [KO:K10108]
VS_II0221  [KO:K10109]
VS_II0222  [KO:K10110]
VS_II0399  [KO:K02012]
VS_II0401  [KO:K02010] [EC:7.2.2.7]
VS_II0402  [KO:K02011]
VS_II0421  [KO:K18889]
VS_II0422  [KO:K18890]
VS_II0498  [KO:K10829] [EC:7.2.2.16]
VS_II0502  [KO:K23227]
VS_II0503  [KO:K23228]
VS_II0509  [KO:K12541]
VS_II0510  [KO:K12541]
VS_II0690  [KO:K09815]
VS_II0691  [KO:K09817] [EC:7.2.2.20]
VS_II0692  [KO:K09816]
VS_II0723  [KO:K02020]
VS_II0724  [KO:K02018]
VS_II0725  [KO:K02017] [EC:7.3.2.5]
VS_II0861  [KO:K12541]
VS_II0862  [KO:K12541]
VS_II0889  [KO:K11069]
VS_II0932  [KO:K13896]
VS_II0933  [KO:K13895]
VS_II0934  [KO:K13894]
VS_II0935  [KO:K13893]
VS_II0940  [KO:K06726] [EC:5.4.99.62]
VS_II0941  [KO:K10441] [EC:7.5.2.7]
VS_II0942  [KO:K10440]
VS_II0943  [KO:K10439]
VS_II1087  [KO:K15598]
VS_II1088  [KO:K15599]
VS_II1089  [KO:K15600]
VS_II1123  [KO:K23184]
VS_II1124  [KO:K23182]
VS_II1125  [KO:K23183]
VS_II1126  [KO:K23181]
VS_II1141  [KO:K02040]
VS_II1211  [KO:K05813]
VS_II1213  [KO:K05814]
VS_II1214  [KO:K05815]
VS_II1215  [KO:K05816] [EC:7.6.2.10]
VS_II1283  [KO:K02042]
VS_II1284  [KO:K02042]
VS_II1285  [KO:K02041] [EC:7.3.2.2]
VS_II1286  [KO:K02044]
VS_II1324  [KO:K15580]
VS_II1377  [KO:K15583 K10823]
VS_II1387  [KO:K10112] [EC:7.5.2.-]
VS_II1389  [KO:K10242]
VS_II1390  [KO:K10241]
VS_II1391  [KO:K10240]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

DBGET integrated database retrieval system