KEGG   PATHWAY: wic00020
Entry
wic00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Wallemia ichthyophaga
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wic00020  Citrate cycle (TCA cycle)
wic00020

Module
wic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:wic00020]
wic_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:wic00020]
wic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wic00020]
wic_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:wic00020]
wic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wic00020]
Other DBs
GO: 0006099
Organism
Wallemia ichthyophaga [GN:wic]
Gene
J056_002627  hypothetical protein [KO:K01647] [EC:2.3.3.1]
J056_002003  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
J056_003336  hypothetical protein [KO:K01681] [EC:4.2.1.3]
J056_000128  hypothetical protein [KO:K00031] [EC:1.1.1.42]
J056_002743  hypothetical protein [KO:K00030] [EC:1.1.1.41]
J056_003128  hypothetical protein [KO:K00030] [EC:1.1.1.41]
J056_004017  hypothetical protein [KO:K00164] [EC:1.2.4.2]
J056_001922  hypothetical protein [KO:K00164] [EC:1.2.4.2]
J056_003637  hypothetical protein [KO:K00658] [EC:2.3.1.61]
J056_001853  hypothetical protein [KO:K00382] [EC:1.8.1.4]
J056_004217  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
J056_003959  Succinyl-CoA ligase subunit beta, hydrogenosomal [KO:K01900] [EC:6.2.1.4 6.2.1.5]
J056_002098  hypothetical protein [KO:K00234] [EC:1.3.5.1]
J056_001291  hypothetical protein [KO:K00235] [EC:1.3.5.1]
J056_004822  hypothetical protein [KO:K00236]
J056_001666  hypothetical protein [KO:K00237]
J056_002608  hypothetical protein [KO:K01679] [EC:4.2.1.2]
J056_002821  hypothetical protein [KO:K00026] [EC:1.1.1.37]
J056_004699  hypothetical protein [KO:K00026] [EC:1.1.1.37]
J056_000070  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
J056_002313  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
J056_001642  hypothetical protein [KO:K00161] [EC:1.2.4.1]
J056_002571  hypothetical protein [KO:K00162] [EC:1.2.4.1]
J056_002393  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wic00010  Glycolysis / Gluconeogenesis
wic00053  Ascorbate and aldarate metabolism
wic00061  Fatty acid biosynthesis
wic00062  Fatty acid elongation
wic00071  Fatty acid degradation
wic00190  Oxidative phosphorylation
wic00220  Arginine biosynthesis
wic00250  Alanine, aspartate and glutamate metabolism
wic00280  Valine, leucine and isoleucine degradation
wic00350  Tyrosine metabolism
wic00470  D-Amino acid metabolism
wic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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