KEGG   PATHWAY: ztr00020
Entry
ztr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Zymoseptoria tritici
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ztr00020  Citrate cycle (TCA cycle)
ztr00020

Module
ztr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ztr00020]
ztr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ztr00020]
ztr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ztr00020]
ztr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ztr00020]
ztr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ztr00020]
Other DBs
GO: 0006099
Organism
Zymoseptoria tritici [GN:ztr]
Gene
MYCGRDRAFT_103124  CIT2; citrate synthase [KO:K01647] [EC:2.3.3.1]
MYCGRDRAFT_107161  CIT3; citrate synthase [KO:K01647] [EC:2.3.3.1]
MYCGRDRAFT_108333  CIT1; citrate synthase [KO:K01647] [EC:2.3.3.1]
MYCGRDRAFT_62567  hypothetical protein [KO:K01648] [EC:2.3.3.8]
MYCGRDRAFT_105760  hypothetical protein [KO:K01648] [EC:2.3.3.8]
MYCGRDRAFT_106055  ACO1; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MYCGRDRAFT_98270  IDP1; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MYCGRDRAFT_101434  IDH2; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MYCGRDRAFT_105053  IDH1; isocitrate dehydrogenase [NAD] subunit 1 [KO:K00030] [EC:1.1.1.41]
MYCGRDRAFT_99732  KGD1; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MYCGRDRAFT_111309  KGD2; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MYCGRDRAFT_73364  LPD1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MYCGRDRAFT_74730  LSC1; succinate--CoA ligase (GDP-forming) subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MYCGRDRAFT_67374  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MYCGRDRAFT_56933  LSC2; succinate--CoA ligase (GDP-forming) subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
MYCGRDRAFT_53658  SDH1; succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
MYCGRDRAFT_71498  hypothetical protein [KO:K00234] [EC:1.3.5.1]
MYCGRDRAFT_74146  SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
MYCGRDRAFT_48520  SDH3_2; succinate dehydrogenase cytochrome B subunit [KO:K00236]
MYCGRDRAFT_74581  SDH3; succinate dehydrogenase cytochrome B subunit [KO:K00236]
MYCGRDRAFT_57478  SDH4; succinate dehydrogenase flavoprotein subunit [KO:K00237]
MYCGRDRAFT_100165  FUM1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MYCGRDRAFT_105971  mdh1; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
MYCGRDRAFT_105501  MDH2; malate DEHYDROGENASE, NAD-dependent [KO:K00026] [EC:1.1.1.37]
MYCGRDRAFT_73616  PYC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MYCGRDRAFT_100129  PCK1; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
MYCGRDRAFT_70215  PDA1; pyruvate dehydrogenase E1, alpha subunit [KO:K00161] [EC:1.2.4.1]
MYCGRDRAFT_69357  PDB1; pyruvate dehydrogenase E1, BETA subunit [KO:K00162] [EC:1.2.4.1]
MYCGRDRAFT_105957  LAT1; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ztr00010  Glycolysis / Gluconeogenesis
ztr00053  Ascorbate and aldarate metabolism
ztr00061  Fatty acid biosynthesis
ztr00062  Fatty acid elongation
ztr00071  Fatty acid degradation
ztr00190  Oxidative phosphorylation
ztr00220  Arginine biosynthesis
ztr00250  Alanine, aspartate and glutamate metabolism
ztr00280  Valine, leucine and isoleucine degradation
ztr00350  Tyrosine metabolism
ztr00470  D-Amino acid metabolism
ztr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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