KEGG   PATHWAY: patr00030
Entry
patr00030                   Pathway                                
Name
Pentose phosphate pathway - Pectobacterium atrosepticum JG10-08
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
patr00030  Pentose phosphate pathway
patr00030

Module
patr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:patr00030]
patr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:patr00030]
patr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:patr00030]
patr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:patr00030]
patr_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:patr00030]
patr_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:patr00030]
patr_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:patr00030]
Other DBs
GO: 0006098
Organism
Pectobacterium atrosepticum JG10-08 [GN:patr]
Gene
EV46_19525  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
EV46_11940  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
EV46_17365  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
EV46_07105  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
EV46_07310  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
EV46_20350  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
EV46_03955  transketolase [KO:K00615] [EC:2.2.1.1]
EV46_09370  transketolase [KO:K00615] [EC:2.2.1.1]
EV46_09375  transketolase [KO:K00615] [EC:2.2.1.1]
EV46_19195  transketolase [KO:K00615] [EC:2.2.1.1]
EV46_03960  transaldolase [KO:K00616] [EC:2.2.1.2]
EV46_19060  transaldolase [KO:K00616] [EC:2.2.1.2]
EV46_19155  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
EV46_03965  ribose 5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
EV46_03135  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
EV46_13095  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
EV46_00070  ribokinase [KO:K00852] [EC:2.7.1.15]
EV46_03145  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
EV46_06755  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
EV46_02570  ribose-phosphate pyrophosphokinase [KO:K05774] [EC:2.7.4.23]
EV46_10470  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
EV46_08790  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
EV46_11935  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EV46_00395  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
EV46_08800  idnK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
EV46_21715  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
EV46_01810  hypothetical protein [KO:K01624] [EC:4.1.2.13]
EV46_01815  aldolase [KO:K01624] [EC:4.1.2.13]
EV46_19180  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
EV46_19265  fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
EV46_21325  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
EV46_21445  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
EV46_11320  permease [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
patr00010  Glycolysis / Gluconeogenesis
patr00040  Pentose and glucuronate interconversions
patr00052  Galactose metabolism
patr00230  Purine metabolism
patr00240  Pyrimidine metabolism
patr00340  Histidine metabolism
patr00630  Glyoxylate and dicarboxylate metabolism
patr00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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