PATHWAY: pds00970
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Entry
pds00970 Pathway
Name
Aminoacyl-tRNA biosynthesis - Photobacterium damselae subsp. damselae
Class
Genetic Information Processing; Translation
BRITE hierarchy
Pathway map
pds00970
Aminoacyl-tRNA biosynthesis
Organism
Photobacterium damselae subsp. damselae [GN:
pds
]
Gene
CAY62_00255
[KO:
K14227
]
CAY62_00260
[KO:
K14218
]
CAY62_00280
[KO:
K14227
]
CAY62_00285
[KO:
K14218
]
CAY62_00305
[KO:
K14227
]
CAY62_00310
[KO:
K14218
]
CAY62_00330
[KO:
K14227
]
CAY62_00335
[KO:
K14218
]
CAY62_00350
[KO:
K14221
]
CAY62_00405
[KO:
K14234
]
CAY62_00410
[KO:
K14236
]
CAY62_00415
[KO:
K14225
]
CAY62_00420
[KO:
K14234
]
CAY62_00745
[KO:
K14230
]
CAY62_00750
[KO:
K14225
]
CAY62_00755
[KO:
K14230
]
CAY62_00760
[KO:
K14225
]
CAY62_00765
[KO:
K14230
]
CAY62_00770
[KO:
K14225
]
CAY62_00775
[KO:
K14230
]
CAY62_00780
[KO:
K14225
]
CAY62_00785
[KO:
K14230
]
CAY62_00790
[KO:
K14225
]
CAY62_00795
[KO:
K14230
]
CAY62_00800
[KO:
K14225
]
CAY62_00805
[KO:
K14230
]
CAY62_00810
[KO:
K14225
]
CAY62_00815
[KO:
K14225
]
CAY62_00820
[KO:
K14225
]
CAY62_00825
[KO:
K14225
]
CAY62_00830
[KO:
K14225
]
CAY62_00835
[KO:
K14225
]
CAY62_00840
[KO:
K14225
]
CAY62_01105
[KO:
K14221
]
CAY62_01340
[KO:
K14230
]
CAY62_01540
[KO:
K01873
] [EC:
6.1.1.9
]
CAY62_01570
[KO:
K14228
]
CAY62_01605
[KO:
K04567
] [EC:
6.1.1.6
]
CAY62_01630
[KO:
K14221
]
CAY62_01725
[KO:
K01866
] [EC:
6.1.1.1
]
CAY62_01905
[KO:
K04567
] [EC:
6.1.1.6
]
CAY62_01985
[KO:
K01870
] [EC:
6.1.1.5
]
CAY62_02070
[KO:
K14228
]
CAY62_02075
[KO:
K14230
]
CAY62_02265
[KO:
K01892
] [EC:
6.1.1.21
]
CAY62_02515
[KO:
K14224
]
CAY62_02520
[KO:
K14229
]
CAY62_02525
[KO:
K14237
]
CAY62_02530
[KO:
K14218
]
CAY62_02550
[KO:
K14221
]
CAY62_02565
[KO:
K14238
]
CAY62_02575
[KO:
K01042
] [EC:
2.9.1.1
]
CAY62_02905
[KO:
K01892
] [EC:
6.1.1.21
]
CAY62_02925
[KO:
K01872
] [EC:
6.1.1.7
]
CAY62_03370
[KO:
K01885
] [EC:
6.1.1.17
]
CAY62_03375
[KO:
K14218
]
CAY62_03385
[KO:
K14219
]
CAY62_04070
[KO:
K01886
] [EC:
6.1.1.18
]
CAY62_04215
[KO:
K01887
] [EC:
6.1.1.19
]
CAY62_04375
[KO:
K01883
] [EC:
6.1.1.16
]
CAY62_04440
[KO:
K01876
] [EC:
6.1.1.12
]
CAY62_04560
[KO:
K14233
]
CAY62_04565
[KO:
K14233
]
CAY62_04620
[KO:
K14233
]
CAY62_04625
[KO:
K14233
]
CAY62_05110
[KO:
K14237
]
CAY62_05115
[KO:
K14237
]
CAY62_05120
[KO:
K14237
]
CAY62_05125
[KO:
K14237
]
CAY62_05165
[KO:
K01868
] [EC:
6.1.1.3
]
CAY62_05330
[KO:
K01893
] [EC:
6.1.1.22
]
CAY62_05500
[KO:
K01867
] [EC:
6.1.1.2
]
CAY62_05540
[KO:
K14222
]
CAY62_05545
[KO:
K14228
]
CAY62_05550
[KO:
K14222
]
CAY62_05560
[KO:
K14228
]
CAY62_05565
[KO:
K14222
]
CAY62_05575
[KO:
K14228
]
CAY62_05580
[KO:
K14222
]
CAY62_05585
[KO:
K14228
]
CAY62_05590
[KO:
K14222
]
CAY62_05595
[KO:
K14228
]
CAY62_07770
[KO:
K01890
] [EC:
6.1.1.20
]
CAY62_07775
[KO:
K01889
] [EC:
6.1.1.20
]
CAY62_08420
[KO:
K14220
]
CAY62_08425
[KO:
K14236
]
CAY62_08430
[KO:
K14233
]
CAY62_08440
[KO:
K14220
]
CAY62_08445
[KO:
K14236
]
CAY62_08450
[KO:
K14234
]
CAY62_08455
[KO:
K14233
]
CAY62_08630
[KO:
K14228
]
CAY62_08635
[KO:
K14225
]
CAY62_08640
[KO:
K14222
]
CAY62_09045
metG; methionine--tRNA ligase [KO:
K01874
] [EC:
6.1.1.10
]
CAY62_09065
[KO:
K01875
] [EC:
6.1.1.11
]
CAY62_09680
[KO:
K14219
]
CAY62_10115
[KO:
K14236
]
CAY62_10120
[KO:
K14236
]
CAY62_10125
[KO:
K14236
]
CAY62_10130
[KO:
K14236
]
CAY62_10135
[KO:
K14236
]
CAY62_10325
[KO:
K14232
]
CAY62_10330
[KO:
K14232
]
CAY62_10335
[KO:
K14232
]
CAY62_10340
[KO:
K14232
]
CAY62_10345
[KO:
K14232
]
CAY62_10445
[KO:
K14230
]
CAY62_10450
[KO:
K14228
]
CAY62_10455
[KO:
K14223
]
CAY62_10460
[KO:
K14230
]
CAY62_10465
[KO:
K14228
]
CAY62_10470
[KO:
K14223
]
CAY62_10475
[KO:
K14230
]
CAY62_10480
[KO:
K14228
]
CAY62_10485
[KO:
K14223
]
CAY62_10490
[KO:
K14230
]
CAY62_10495
[KO:
K14228
]
CAY62_10500
[KO:
K14223
]
CAY62_10505
[KO:
K14230
]
CAY62_10510
[KO:
K14228
]
CAY62_10515
[KO:
K14223
]
CAY62_10520
[KO:
K14228
]
CAY62_10525
[KO:
K14228
]
CAY62_10530
[KO:
K14223
]
CAY62_10535
[KO:
K14228
]
CAY62_10540
[KO:
K14228
]
CAY62_10545
[KO:
K14223
]
CAY62_10550
[KO:
K14228
]
CAY62_10555
[KO:
K14228
]
CAY62_10560
[KO:
K14223
]
CAY62_10565
[KO:
K14228
]
CAY62_10570
[KO:
K14228
]
CAY62_10575
[KO:
K14228
]
CAY62_10580
[KO:
K14223
]
CAY62_10585
[KO:
K14228
]
CAY62_10590
[KO:
K14228
]
CAY62_10595
[KO:
K14223
]
CAY62_10600
[KO:
K14228
]
CAY62_10660
[KO:
K01869
] [EC:
6.1.1.4
]
CAY62_10890
[KO:
K14235
]
CAY62_10895
[KO:
K14221
]
CAY62_10910
[KO:
K14218
]
CAY62_10915
[KO:
K14237
]
CAY62_10920
[KO:
K14224
]
CAY62_10985
[KO:
K01881
] [EC:
6.1.1.15
]
CAY62_11325
[KO:
K14221
]
CAY62_11340
[KO:
K14218
]
CAY62_11345
[KO:
K14227
]
CAY62_11490
[KO:
K14219
]
CAY62_11495
[KO:
K14219
]
CAY62_11500
[KO:
K14219
]
CAY62_11505
[KO:
K14219
]
CAY62_11510
[KO:
K14219
]
CAY62_11515
[KO:
K14219
]
CAY62_11520
[KO:
K14219
]
CAY62_11525
[KO:
K14219
]
CAY62_11530
[KO:
K14233
]
CAY62_11535
[KO:
K14219
]
CAY62_11540
[KO:
K14219
]
CAY62_11545
[KO:
K14233
]
CAY62_11550
[KO:
K14219
]
CAY62_11555
[KO:
K14219
]
CAY62_11560
[KO:
K14233
]
CAY62_11575
[KO:
K01872
] [EC:
6.1.1.7
]
CAY62_11955
[KO:
K14231
]
CAY62_11960
[KO:
K14220
]
CAY62_11965
[KO:
K14234
]
CAY62_11970
[KO:
K14231
]
CAY62_11975
[KO:
K14220
]
CAY62_11980
[KO:
K14234
]
CAY62_11985
[KO:
K14231
]
CAY62_11990
[KO:
K14220
]
CAY62_11995
[KO:
K14234
]
CAY62_12005
[KO:
K14231
]
CAY62_12010
[KO:
K14220
]
CAY62_12015
[KO:
K14234
]
CAY62_12020
[KO:
K14231
]
CAY62_12025
[KO:
K14220
]
CAY62_12030
[KO:
K14234
]
CAY62_12035
[KO:
K14231
]
CAY62_12040
[KO:
K14220
]
CAY62_12045
[KO:
K14234
]
CAY62_12720
[KO:
K14234
]
CAY62_12735
[KO:
K14237
]
CAY62_12740
[KO:
K14229
]
CAY62_12745
[KO:
K14224
]
CAY62_13105
[KO:
K01867
] [EC:
6.1.1.2
]
CAY62_13950
[KO:
K14232
]
CAY62_13955
[KO:
K14226
]
CAY62_13960
[KO:
K14232
]
CAY62_13965
[KO:
K14226
]
CAY62_13970
[KO:
K14219
]
CAY62_14015
[KO:
K14235
]
CAY62_14020
[KO:
K14221
]
CAY62_14035
[KO:
K14218
]
CAY62_14040
[KO:
K14224
]
CAY62_14125
[KO:
K01878
] [EC:
6.1.1.14
]
CAY62_14130
[KO:
K01879
] [EC:
6.1.1.14
]
CAY62_14440
[KO:
K00604
] [EC:
2.1.2.9
]
CAY62_14525
[KO:
K14224
]
CAY62_14530
[KO:
K14229
]
CAY62_14535
[KO:
K14237
]
CAY62_14555
[KO:
K14224
]
CAY62_14560
[KO:
K14229
]
CAY62_14565
[KO:
K14237
]
CAY62_14580
[KO:
K14221
]
CAY62_17055
[KO:
K14225
]
CAY62_17350
[KO:
K14233
]
CAY62_17355
[KO:
K14221
]
CAY62_17680
[KO:
K14233
]
CAY62_17775
[KO:
K14233
]
CAY62_17805
[KO:
K14233
]
CAY62_17895
[KO:
K14232
]
CAY62_18010
[KO:
K14221
]
CAY62_18015
[KO:
K14233
]
CAY62_19075
[KO:
K14233
]
CAY62_19095
[KO:
K14233
]
Compound
C00025
L-Glutamate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00078
L-Tryptophan
C00079
L-Phenylalanine
C00082
L-Tyrosine
C00097
L-Cysteine
C00101
Tetrahydrofolate
C00123
L-Leucine
C00135
L-Histidine
C00148
L-Proline
C00152
L-Asparagine
C00183
L-Valine
C00188
L-Threonine
C00234
10-Formyltetrahydrofolate
C00407
L-Isoleucine
C00886
L-Alanyl-tRNA
C01005
O-Phospho-L-serine
C01931
L-Lysyl-tRNA
C02047
L-Leucyl-tRNA
C02163
L-Arginyl-tRNA(Arg)
C02282
Glutaminyl-tRNA
C02412
Glycyl-tRNA(Gly)
C02430
L-Methionyl-tRNA
C02553
L-Seryl-tRNA(Ser)
C02554
L-Valyl-tRNA(Val)
C02702
L-Prolyl-tRNA(Pro)
C02839
L-Tyrosyl-tRNA(Tyr)
C02984
L-Aspartyl-tRNA(Asp)
C02987
L-Glutamyl-tRNA(Glu)
C02988
L-Histidyl-tRNA(His)
C02992
L-Threonyl-tRNA(Thr)
C03125
L-Cysteinyl-tRNA(Cys)
C03127
L-Isoleucyl-tRNA(Ile)
C03294
N-Formylmethionyl-tRNA
C03402
L-Asparaginyl-tRNA(Asn)
C03511
L-Phenylalanyl-tRNA(Phe)
C03512
L-Tryptophanyl-tRNA(Trp)
C06112
L-Glutamyl-tRNA(Gln)
C06113
L-Aspartyl-tRNA(Asn)
C06481
L-Seryl-tRNA(Sec)
C06482
L-Selenocysteinyl-tRNA(Sec)
C16138
L-Pyrrolysine
C16638
O-Phosphoseryl-tRNA(Sec)
C17022
O-Phosphoseryl-tRNA(Cys)
C17027
L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:
18252769
Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:
10.1093/nar/gkn015
Reference
PMID:
15314242
Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:
10.1073/pnas.0405362101
Related
pathway
pds00250
Alanine, aspartate and glutamate metabolism
pds00260
Glycine, serine and threonine metabolism
pds00270
Cysteine and methionine metabolism
pds00290
Valine, leucine and isoleucine biosynthesis
pds00300
Lysine biosynthesis
pds00330
Arginine and proline metabolism
pds00340
Histidine metabolism
pds00380
Tryptophan metabolism
pds00400
Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970
DBGET
integrated database retrieval system
