KEGG   PATHWAY: pfj00020
Entry
pfj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudocercospora fijiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfj00020  Citrate cycle (TCA cycle)
pfj00020

Module
pfj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfj00020]
pfj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfj00020]
pfj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfj00020]
pfj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfj00020]
pfj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfj00020]
Other DBs
GO: 0006099
Organism
Pseudocercospora fijiensis [GN:pfj]
Gene
MYCFIDRAFT_71489  hypothetical protein [KO:K01647] [EC:2.3.3.1]
MYCFIDRAFT_53988  hypothetical protein [KO:K01647] [EC:2.3.3.1]
MYCFIDRAFT_212387  hypothetical protein [KO:K01648] [EC:2.3.3.8]
MYCFIDRAFT_51692  hypothetical protein [KO:K01648] [EC:2.3.3.8]
MYCFIDRAFT_212542  hypothetical protein [KO:K01681] [EC:4.2.1.3]
MYCFIDRAFT_64238  hypothetical protein [KO:K00031] [EC:1.1.1.42]
MYCFIDRAFT_88249  hypothetical protein [KO:K00030] [EC:1.1.1.41]
MYCFIDRAFT_211897  hypothetical protein [KO:K00030] [EC:1.1.1.41]
MYCFIDRAFT_152624  hypothetical protein [KO:K00164] [EC:1.2.4.2]
MYCFIDRAFT_184029  hypothetical protein [KO:K00658] [EC:2.3.1.61]
MYCFIDRAFT_49180  hypothetical protein [KO:K00382] [EC:1.8.1.4]
MYCFIDRAFT_209780  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MYCFIDRAFT_59554  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MYCFIDRAFT_209837  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
MYCFIDRAFT_201332  hypothetical protein [KO:K00234] [EC:1.3.5.1]
MYCFIDRAFT_87948  hypothetical protein [KO:K00234] [EC:1.3.5.1]
MYCFIDRAFT_51773  hypothetical protein [KO:K00235] [EC:1.3.5.1]
MYCFIDRAFT_72469  hypothetical protein [KO:K00236]
MYCFIDRAFT_7820  hypothetical protein [KO:K00236]
MYCFIDRAFT_50482  hypothetical protein [KO:K00237]
MYCFIDRAFT_149663  hypothetical protein [KO:K01679] [EC:4.2.1.2]
MYCFIDRAFT_88245  hypothetical protein [KO:K00026] [EC:1.1.1.37]
MYCFIDRAFT_188930  hypothetical protein [KO:K00026] [EC:1.1.1.37]
MYCFIDRAFT_87876  hypothetical protein [KO:K01958] [EC:6.4.1.1]
MYCFIDRAFT_210120  hypothetical protein [KO:K01610] [EC:4.1.1.49]
MYCFIDRAFT_60055  hypothetical protein [KO:K00161] [EC:1.2.4.1]
MYCFIDRAFT_61078  hypothetical protein [KO:K00162] [EC:1.2.4.1]
MYCFIDRAFT_202092  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfj00010  Glycolysis / Gluconeogenesis
pfj00053  Ascorbate and aldarate metabolism
pfj00061  Fatty acid biosynthesis
pfj00062  Fatty acid elongation
pfj00071  Fatty acid degradation
pfj00190  Oxidative phosphorylation
pfj00220  Arginine biosynthesis
pfj00250  Alanine, aspartate and glutamate metabolism
pfj00280  Valine, leucine and isoleucine degradation
pfj00350  Tyrosine metabolism
pfj00470  D-Amino acid metabolism
pfj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system