KEGG   PATHWAY: pgol00020
Entry
pgol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Parabacteroides goldsteinii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pgol00020  Citrate cycle (TCA cycle)
pgol00020

Module
pgol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pgol00020]
pgol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pgol00020]
pgol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pgol00020]
pgol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pgol00020]
pgol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pgol00020]
Other DBs
GO: 0006099
Organism
Parabacteroides goldsteinii [GN:pgol]
Gene
K6V26_07085  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K6V26_07075  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K6V26_07080  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K6V26_08105  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
K6V26_08115  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6V26_22775  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6V26_06585  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K6V26_21265  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K6V26_06575  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K6V26_21260  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K6V26_06570  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
K6V26_06590  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
K6V26_10010  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K6V26_10015  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K6V26_23210  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K6V26_23215  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K6V26_23205  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
K6V26_21040  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K6V26_27795  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K6V26_02025  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6V26_08230  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6V26_19905  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
K6V26_21220  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
K6V26_12675  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pgol00010  Glycolysis / Gluconeogenesis
pgol00053  Ascorbate and aldarate metabolism
pgol00061  Fatty acid biosynthesis
pgol00190  Oxidative phosphorylation
pgol00220  Arginine biosynthesis
pgol00250  Alanine, aspartate and glutamate metabolism
pgol00280  Valine, leucine and isoleucine degradation
pgol00350  Tyrosine metabolism
pgol00470  D-Amino acid metabolism
pgol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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