KEGG   PATHWAY: pic00020
Entry
pic00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Scheffersomyces stipitis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pic00020  Citrate cycle (TCA cycle)
pic00020

Module
pic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pic00020]
pic_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pic00020]
pic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pic00020]
pic_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pic00020]
pic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pic00020]
Other DBs
GO: 0006099
Organism
Scheffersomyces stipitis [GN:pic]
Gene
PICST_35330  SDH5; membrane anchor in succinate dehydrogenase complex [KO:K00237]
PICST_35527  SDH6; succinate dehydrogenase [KO:K00236]
PICST_36951  LPD1; FAD flavoprotein [KO:K00382] [EC:1.8.1.4]
PICST_40132  MDHM; NAD-dependent malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
PICST_42313  IDH2; mitochondrial isocitrate dehydrogenase (NAD+) subunit 2 [KO:K00030] [EC:1.1.1.41]
PICST_43870  IDP2; Isocitrate dehydrogenase [NADP] peroxisomal (Oxalosuccinate decarboxylase) (IDH) (PS-NADP-IDH) (CtIDP2) [KO:K00031] [EC:1.1.1.42]
PICST_50416  SDH2; succinate dehydrogenase subunit [KO:K00235] [EC:1.3.5.1]
PICST_66251  SDH1; succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
PICST_66451  MDH1; mitochondrial malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
PICST_66961  LSC2; succinate--CoA ligase (GDP-forming) beta chain (LSC2) [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PICST_68238  PDB1; pyruvate dehydrogenase E1 component, beta subunit (PDH) [KO:K00162] [EC:1.2.4.1]
PICST_68297  KGD2; 2-oxoglutarate dehydrogenase complex E2 component [KO:K00658] [EC:2.3.1.61]
PICST_69303  LSC1; succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PICST_71471  PCK1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PICST_72104  IDP1; Isocitrate dehydrogenase [NADP], mitochondrial precursor (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (CtIDP1) [KO:K00031] [EC:1.1.1.42]
PICST_74587  FUM2; Fumarase converts fumaric acid to L-malic acid in the TCA cycle [KO:K01679] [EC:4.2.1.2]
PICST_78343  MDH2; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
PICST_79721  KGD1; alpha-ketoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
PICST_80322  PDA1; alpha subunit of pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
PICST_82614  LAT1; dihydrolipoamide acetyltransferase component [KO:K00627] [EC:2.3.1.12]
PICST_85181  ACO1; Aconitase, mitochondrial [KO:K01681] [EC:4.2.1.3]
PICST_85554  CIT1; citrate synthase (CISY) [KO:K01647] [EC:2.3.3.1]
PICST_85745  FUM1; fumarase [KO:K01679] [EC:4.2.1.2]
PICST_90476  SDH4; succinate dehydrogenase membrane anchor subunit [KO:K00237]
PICST_90975  PYC1; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PICST_91057  IDH1; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pic00010  Glycolysis / Gluconeogenesis
pic00053  Ascorbate and aldarate metabolism
pic00061  Fatty acid biosynthesis
pic00062  Fatty acid elongation
pic00071  Fatty acid degradation
pic00190  Oxidative phosphorylation
pic00220  Arginine biosynthesis
pic00250  Alanine, aspartate and glutamate metabolism
pic00280  Valine, leucine and isoleucine degradation
pic00350  Tyrosine metabolism
pic00470  D-Amino acid metabolism
pic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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