KEGG   PATHWAY: pkr00630
Entry
pkr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas koreensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
pkr00630  Glyoxylate and dicarboxylate metabolism
pkr00630

Module
pkr_M00621  Glycine cleavage system [PATH:pkr00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas koreensis [GN:pkr]
Gene
AYO71_19635  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AYO71_25965  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYO71_23485  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYO71_16375  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
AYO71_27805  malate synthase G [KO:K01638] [EC:2.3.3.9]
AYO71_10940  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AYO71_21315  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AYO71_18720  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AYO71_06085  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYO71_11615  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYO71_13430  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYO71_16385  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYO71_23725  3-hydroxybutyryl-CoA dehydratase [KO:K17865] [EC:4.2.1.55]
AYO71_13355  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AYO71_13350  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
AYO71_13345  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
AYO71_03260  katE; catalase HPII [KO:K03781] [EC:1.11.1.6]
AYO71_26340  catalase [KO:K03781] [EC:1.11.1.6]
AYO71_19900  catalase [KO:K03781] [EC:1.11.1.6]
AYO71_27125  catalase [KO:K03781] [EC:1.11.1.6]
AYO71_07430  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AYO71_25435  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
AYO71_03390  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AYO71_22815  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AYO71_27490  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AYO71_01510  gamma-glutamylputrescine synthetase [KO:K01915] [EC:6.3.1.2]
AYO71_01515  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYO71_04505  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYO71_13405  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYO71_16450  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYO71_19005  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYO71_19060  gamma-glutamylputrescine synthetase [KO:K01915] [EC:6.3.1.2]
AYO71_23315  glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
AYO71_27925  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AYO71_26290  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AYO71_01420  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
AYO71_23910  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
AYO71_01410  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AYO71_23920  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AYO71_00250  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYO71_10975  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYO71_19185  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYO71_01415  glycine cleavage system protein H [KO:K02437]
AYO71_23905  glycine cleavage system protein H [KO:K02437]
AYO71_10880  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
AYO71_10875  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
AYO71_10870  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AYO71_17605  glycerate kinase [KO:K00865] [EC:2.7.1.165]
AYO71_10865  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
AYO71_23750  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AYO71_17160  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AYO71_17165  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
AYO71_17155  formate dehydrogenase subunit beta [KO:K00124]
AYO71_17150  formate dehydrogenase [KO:K00127]
AYO71_27900  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYO71_24125  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYO71_04620  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pkr00010  Glycolysis / Gluconeogenesis
pkr00020  Citrate cycle (TCA cycle)
pkr00030  Pentose phosphate pathway
pkr00053  Ascorbate and aldarate metabolism
pkr00071  Fatty acid degradation
pkr00230  Purine metabolism
pkr00250  Alanine, aspartate and glutamate metabolism
pkr00260  Glycine, serine and threonine metabolism
pkr00620  Pyruvate metabolism
pkr00710  Carbon fixation by Calvin cycle
pkr00750  Vitamin B6 metabolism
pkr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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