KEGG   PATHWAY: pprf00020
Entry
pprf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudodesulfovibrio profundus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pprf00020  Citrate cycle (TCA cycle)
pprf00020

Module
pprf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pprf00020]
pprf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pprf00020]
Other DBs
GO: 0006099
Organism
Pseudodesulfovibrio profundus [GN:pprf]
Gene
DPRO_3277  gltA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DPRO_1639  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DPRO_2879  icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage [KO:K00031] [EC:1.1.1.42]
DPRO_0765  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DPRO_0291  Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DPRO_1938  vorB; Ketoisovalerate oxidoreductase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DPRO_1067  korA; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DPRO_0292  Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DPRO_1937  Thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DPRO_1066  korB; 2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DPRO_1936  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DPRO_1065  korC; 2-oxoglutarate synthase subunit KorC [KO:K00177] [EC:1.2.7.3]
DPRO_1939  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
DPRO_0656  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DPRO_0023  frdA; Fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
DPRO_0024  frdB; Fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
DPRO_0022  Succinate dehydrogenase cytochrome b subunit [KO:K25996]
DPRO_1981  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
DPRO_0651  Carbamoyl-phosphate synthase L chain ATP-binding [KO:K01958] [EC:6.4.1.1]
DPRO_0228  por; Pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DPRO_3827  por; Pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pprf00010  Glycolysis / Gluconeogenesis
pprf00053  Ascorbate and aldarate metabolism
pprf00061  Fatty acid biosynthesis
pprf00071  Fatty acid degradation
pprf00190  Oxidative phosphorylation
pprf00220  Arginine biosynthesis
pprf00250  Alanine, aspartate and glutamate metabolism
pprf00280  Valine, leucine and isoleucine degradation
pprf00350  Tyrosine metabolism
pprf00470  D-Amino acid metabolism
pprf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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