KEGG   PATHWAY: pprf00630
Entry
pprf00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudodesulfovibrio profundus
Class
Metabolism; Carbohydrate metabolism
Pathway map
pprf00630  Glyoxylate and dicarboxylate metabolism
pprf00630

Module
pprf_M00621  Glycine cleavage system [PATH:pprf00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudodesulfovibrio profundus [GN:pprf]
Gene
DPRO_1802  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
DPRO_1502  4-hydroxybutyrate--CoA ligase 1 [KO:K01895] [EC:6.2.1.1]
DPRO_2174  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
DPRO_2231  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
DPRO_3277  gltA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DPRO_1639  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DPRO_3829  glcD; Glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
DPRO_2555  glcD; Glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
DPRO_3830  conserved protein of unknown function [KO:K11473] [EC:1.1.99.14]
DPRO_2556  conserved protein of unknown function [KO:K11473] [EC:1.1.99.14]
DPRO_1998  katA; Catalase [KO:K03781] [EC:1.11.1.6]
DPRO_1823  gyaR; Glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
DPRO_1575  cbbM; Ribulose bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
DPRO_1695  glnA; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
DPRO_2746  glnA; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
DPRO_2687  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DPRO_0763  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
DPRO_0764  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
DPRO_0439  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
DPRO_0765  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DPRO_0762  gcvH; glycine cleavage complex lipoylprotein [KO:K02437]
DPRO_1824  gck; Glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
DPRO_2284  fdhA; Formate dehydrogenase, alpha subunit Selenocysteine containing protein, fused to 12494 [KO:K00123] [EC:1.17.1.9]
DPRO_2285  Molybdopterin oxidoreductase Fe4S4 region [KO:K00123] [EC:1.17.1.9]
DPRO_3478  Formate dehydrogenase, alpha subunit selenocysteine containing protein, fused to 20159 [KO:K00123] [EC:1.17.1.9]
DPRO_3479  fdhA; Formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
DPRO_3537  Formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
DPRO_3538  Formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
DPRO_3535  fdhB; Formate dehydrogenase subunit beta [KO:K00124]
DPRO_2283  Formate dehydrogenase 2 subunit beta (cytochrome c-553) [KO:K00124]
DPRO_3480  Formate dehydrogenase 2 subunit beta (cytochrome c-553) [KO:K00124]
DPRO_3278  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00124]
DPRO_3658  Protein DVU_0535 [KO:K00124]
DPRO_1732  Cytochrome B6 [KO:K00127]
DPRO_2516  Deca-heme C-type cytochrome [KO:K00127]
DPRO_2892  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pprf00010  Glycolysis / Gluconeogenesis
pprf00020  Citrate cycle (TCA cycle)
pprf00030  Pentose phosphate pathway
pprf00053  Ascorbate and aldarate metabolism
pprf00071  Fatty acid degradation
pprf00230  Purine metabolism
pprf00250  Alanine, aspartate and glutamate metabolism
pprf00260  Glycine, serine and threonine metabolism
pprf00620  Pyruvate metabolism
pprf00710  Carbon fixation by Calvin cycle
pprf00750  Vitamin B6 metabolism
pprf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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