KEGG   PATHWAY: pps03430
Entry
pps03430                    Pathway                                
Name
Mismatch repair - Pan paniscus (bonobo)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pps03430  Mismatch repair
pps03430

Other DBs
GO: 0006298
Organism
Pan paniscus (bonobo) [GN:pps]
Gene
100969963  LIG1; DNA ligase 1 isoform X6 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
100971331  RFC2; replication factor C subunit 2 isoform X3 [KO:K10755]
100971752  MLH1; DNA mismatch repair protein Mlh1 isoform X1 [KO:K08734]
100972976  MSH3; DNA mismatch repair protein Msh3 isoform X2 [KO:K08736]
100973412  RFC1; replication factor C subunit 1 isoform X5 [KO:K10754]
100976787  [KO:K10858]
100978965  RPA3; replication protein A 14 kDa subunit [KO:K10740]
100979247  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
100980487  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
100980787  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
100980865  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
100982694  RPA4; replication protein A 30 kDa subunit [KO:K10741]
100983945  RPA2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
100984592  MSH2; DNA mismatch repair protein Msh2 [KO:K08735]
100985036  MLH3; DNA mismatch repair protein Mlh3 isoform X1 [KO:K08739]
100985634  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
100986695  MSH6; DNA mismatch repair protein Msh6 [KO:K08737]
100987805  PCNA; proliferating cell nuclear antigen [KO:K04802]
100988112  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
100990817  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
100993288  EXO1; exonuclease 1 isoform X1 [KO:K10746] [EC:3.1.-.-]
100994242  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X2 [KO:K03111]
100995558  RFC4; replication factor C subunit 4 [KO:K10755]
117980873  [KO:K10858]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
Related
pathway
pps05210  Colorectal cancer
KO pathway
ko03430   

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