KEGG   PATHWAY: psaa00030
Entry
psaa00030                   Pathway                                
Name
Pentose phosphate pathway - Paraburkholderia sabiae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psaa00030  Pentose phosphate pathway
psaa00030

Module
psaa_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:psaa00030]
psaa_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:psaa00030]
psaa_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:psaa00030]
psaa_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:psaa00030]
psaa_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:psaa00030]
Other DBs
GO: 0006098
Organism
Paraburkholderia sabiae [GN:psaa]
Gene
QEN71_01695  [KO:K00948] [EC:2.7.6.1]
QEN71_02435  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
QEN71_03325  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
QEN71_03330  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
QEN71_03770  [KO:K03841] [EC:3.1.3.11]
QEN71_04460  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
QEN71_07255  [KO:K00874] [EC:2.7.1.45]
QEN71_07265  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
QEN71_07360  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
QEN71_08005  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
QEN71_09245  [KO:K01621] [EC:4.1.2.9 4.1.2.22]
QEN71_11535  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
QEN71_11540  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
QEN71_11590  [KO:K00615] [EC:2.2.1.1]
QEN71_11595  [KO:K00615] [EC:2.2.1.1]
QEN71_13015  [KO:K01623] [EC:4.1.2.13]
QEN71_14185  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
QEN71_17755  [KO:K19813] [EC:1.1.5.9]
QEN71_18015  [KO:K01053] [EC:3.1.1.17]
QEN71_20185  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
QEN71_20200  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
QEN71_20520  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
QEN71_21930  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
QEN71_22175  [KO:K00874] [EC:2.7.1.45]
QEN71_22900  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
QEN71_24520  [KO:K07404] [EC:3.1.1.31]
QEN71_24590  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
QEN71_25410  [KO:K15778] [EC:5.4.2.8 5.4.2.2]
QEN71_25970  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
QEN71_26900  [KO:K00851] [EC:2.7.1.12]
QEN71_26910  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
QEN71_26915  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
QEN71_27005  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
QEN71_27535  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
QEN71_32495  [KO:K07404] [EC:3.1.1.31]
QEN71_32770  [KO:K03841] [EC:3.1.3.11]
QEN71_33575  [KO:K07404] [EC:3.1.1.31]
QEN71_34110  [KO:K03841] [EC:3.1.3.11]
QEN71_35455  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
QEN71_35725  [KO:K00131] [EC:1.2.1.9]
QEN71_35745  [KO:K00874] [EC:2.7.1.45]
QEN71_35895  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
QEN71_39015  [KO:K00117] [EC:1.1.5.2]
QEN71_39655  [KO:K07404] [EC:3.1.1.31]
QEN71_41380  [KO:K07404] [EC:3.1.1.31]
QEN71_41435  [KO:K00131] [EC:1.2.1.9]
QEN71_43070  [KO:K00852] [EC:2.7.1.15]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
psaa00010  Glycolysis / Gluconeogenesis
psaa00040  Pentose and glucuronate interconversions
psaa00052  Galactose metabolism
psaa00230  Purine metabolism
psaa00240  Pyrimidine metabolism
psaa00340  Histidine metabolism
psaa00630  Glyoxylate and dicarboxylate metabolism
psaa00750  Vitamin B6 metabolism
KO pathway
ko00030   

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