KEGG   PATHWAY: pvu00030
Entry
pvu00030                    Pathway                                
Name
Pentose phosphate pathway - Phaseolus vulgaris (common bean)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvu00030  Pentose phosphate pathway
pvu00030

Module
pvu_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pvu00030]
pvu_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pvu00030]
pvu_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pvu00030]
pvu_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pvu00030]
Other DBs
GO: 0006098
Organism
Phaseolus vulgaris (common bean) [GN:pvu]
Gene
PHAVU_009G057500g  hypothetical protein [KO:K01810] [EC:5.3.1.9]
PHAVU_008G180200g  hypothetical protein [KO:K01810] [EC:5.3.1.9]
PHAVU_004G023500g  hypothetical protein [KO:K01810] [EC:5.3.1.9]
PHAVU_010G143200g  hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PHAVU_004G0570001  hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PHAVU_004G0570000  hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PHAVU_001G223300g  hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PHAVU_008G148700g  hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PHAVU_008G016900g  hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PHAVU_009G049100g  hypothetical protein [KO:K01057] [EC:3.1.1.31]
PHAVU_009G049200g  hypothetical protein [KO:K01057] [EC:3.1.1.31]
PHAVU_009G049300g  hypothetical protein [KO:K01057] [EC:3.1.1.31]
PHAVU_003G040800g  hypothetical protein [KO:K01057] [EC:3.1.1.31]
PHAVU_008G023700g  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PHAVU_002G295200g  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PHAVU_002G295300g  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PHAVU_004G046100g  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PHAVU_001G095400g  hypothetical protein [KO:K01783] [EC:5.1.3.1]
PHAVU_003G188800g  hypothetical protein [KO:K01783] [EC:5.1.3.1]
PHAVU_007G006600g  hypothetical protein [KO:K00615] [EC:2.2.1.1]
PHAVU_003G037400g  hypothetical protein [KO:K00615] [EC:2.2.1.1]
PHAVU_003G218000g  hypothetical protein [KO:K00616] [EC:2.2.1.2]
PHAVU_002G281000g  hypothetical protein [KO:K00616] [EC:2.2.1.2]
PHAVU_008G003600g  hypothetical protein [KO:K00616] [EC:2.2.1.2]
PHAVU_006G122300g  hypothetical protein [KO:K01807] [EC:5.3.1.6]
PHAVU_002G234600g  hypothetical protein [KO:K01807] [EC:5.3.1.6]
PHAVU_006G100600g  hypothetical protein [KO:K01807] [EC:5.3.1.6]
PHAVU_007G036500g  hypothetical protein [KO:K01807] [EC:5.3.1.6]
PHAVU_005G070000g  hypothetical protein [KO:K00852] [EC:2.7.1.15]
PHAVU_005G0702000  hypothetical protein [KO:K00852] [EC:2.7.1.15]
PHAVU_002G318400g  hypothetical protein [KO:K01835] [EC:5.4.2.2]
PHAVU_007G064900g  hypothetical protein [KO:K01835] [EC:5.4.2.2]
PHAVU_010G040300g  hypothetical protein [KO:K00948] [EC:2.7.6.1]
PHAVU_003G228800g  hypothetical protein [KO:K00948] [EC:2.7.6.1]
PHAVU_001G045700g  hypothetical protein [KO:K00131] [EC:1.2.1.9]
PHAVU_003G157200g  hypothetical protein [KO:K00131] [EC:1.2.1.9]
PHAVU_003G053900g  hypothetical protein [KO:K00851] [EC:2.7.1.12]
PHAVU_003G054200g  hypothetical protein [KO:K00851] [EC:2.7.1.12]
PHAVU_011G039100g  hypothetical protein [KO:K01623] [EC:4.1.2.13]
PHAVU_008G189200g  hypothetical protein [KO:K01623] [EC:4.1.2.13]
PHAVU_008G282000g  hypothetical protein [KO:K01623] [EC:4.1.2.13]
PHAVU_007G222900g  hypothetical protein [KO:K01623] [EC:4.1.2.13]
PHAVU_007G033800g  hypothetical protein [KO:K01623] [EC:4.1.2.13]
PHAVU_007G079500g  hypothetical protein [KO:K03841] [EC:3.1.3.11]
PHAVU_008G112000g  hypothetical protein [KO:K03841] [EC:3.1.3.11]
PHAVU_004G095800g  hypothetical protein [KO:K03841] [EC:3.1.3.11]
PHAVU_002G213400g  hypothetical protein [KO:K03841] [EC:3.1.3.11]
PHAVU_004G128900g  hypothetical protein [KO:K03841] [EC:3.1.3.11]
PHAVU_010G143900g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_002G148700g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_005G165100g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_004G173900g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_003G088700g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_003G289600g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_002G306800g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_009G112500g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_007G136000g  hypothetical protein [KO:K00850] [EC:2.7.1.11]
PHAVU_003G082000g  hypothetical protein [KO:K00895] [EC:2.7.1.90]
PHAVU_003G009600g  hypothetical protein [KO:K00895] [EC:2.7.1.90]
PHAVU_006G145300g  hypothetical protein [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pvu00010  Glycolysis / Gluconeogenesis
pvu00040  Pentose and glucuronate interconversions
pvu00052  Galactose metabolism
pvu00230  Purine metabolism
pvu00240  Pyrimidine metabolism
pvu00340  Histidine metabolism
pvu00630  Glyoxylate and dicarboxylate metabolism
pvu00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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