KEGG   PATHWAY: rhf00630
Entry
rhf00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodoferax sediminis CHu59-6-5
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhf00630  Glyoxylate and dicarboxylate metabolism
rhf00630

Module
rhf_M00012  Glyoxylate cycle [PATH:rhf00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodoferax sediminis CHu59-6-5 [GN:rhf]
Gene
EUB48_12195  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
EUB48_16880  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EUB48_04620  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
EUB48_08395  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EUB48_11590  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EUB48_01230  malate synthase G [KO:K01638] [EC:2.3.3.9]
EUB48_17290  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EUB48_17325  citrate synthase [KO:K01647] [EC:2.3.3.1]
EUB48_15645  citrate synthase [KO:K01647] [EC:2.3.3.1]
EUB48_17255  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EUB48_02015  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EUB48_06915  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EUB48_11270  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EUB48_10475  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EUB48_11935  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EUB48_08575  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
EUB48_11930  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
EUB48_11840  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
EUB48_11845  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
EUB48_11855  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
EUB48_12050  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EUB48_15110  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EUB48_12045  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EUB48_15105  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EUB48_12040  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
EUB48_15100  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
EUB48_07260  catalase [KO:K03781] [EC:1.11.1.6]
EUB48_02185  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EUB48_12660  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
EUB48_17540  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EUB48_01390  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
EUB48_09075  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
EUB48_06885  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EUB48_07720  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EUB48_07180  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
EUB48_11530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EUB48_11475  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EUB48_11630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EUB48_07185  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EUB48_11790  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
EUB48_11795  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
EUB48_11800  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
EUB48_11190  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EUB48_11805  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EUB48_11175  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
EUB48_12610  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
EUB48_14765  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EUB48_04965  2Fe-2S iron-sulfur cluster binding domain-containing protein [KO:K00123] [EC:1.17.1.9]
EUB48_04995  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
EUB48_04960  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
EUB48_05000  4Fe-4S dicluster domain-containing protein [KO:K00124]
EUB48_05010  formate dehydrogenase subunit gamma [KO:K00127]
EUB48_17235  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
EUB48_19610  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rhf00010  Glycolysis / Gluconeogenesis
rhf00020  Citrate cycle (TCA cycle)
rhf00030  Pentose phosphate pathway
rhf00053  Ascorbate and aldarate metabolism
rhf00071  Fatty acid degradation
rhf00230  Purine metabolism
rhf00250  Alanine, aspartate and glutamate metabolism
rhf00260  Glycine, serine and threonine metabolism
rhf00620  Pyruvate metabolism
rhf00710  Carbon fixation in photosynthetic organisms
rhf00750  Vitamin B6 metabolism
rhf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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