KEGG   PATHWAY: sauq00020
Entry
sauq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus aureus subsp. aureus ST228/16035 (MRSA)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sauq00020  Citrate cycle (TCA cycle)
sauq00020

Module
sauq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sauq00020]
sauq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sauq00020]
sauq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sauq00020]
sauq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sauq00020]
sauq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sauq00020]
Other DBs
GO: 0006099
Organism
Staphylococcus aureus subsp. aureus ST228/16035 (MRSA) [GN:sauq]
Gene
SAI4T8_1012360  citZ; Methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
SAI4T8_1009690  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SAI4T8_1012350  citC; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SAI4T8_1010210  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SAI4T8_1010200  odhB; Dihydrolipoamide succinyltransferase E2 component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SAI4T8_1007790  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAI4T8_1011050  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAI4T8_1009270  Pyruvate ferredoxin oxidoreductase alpha chain [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAI4T8_1009280  Putative uncharacterized protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAI4T8_1008890  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SAI4T8_1008880  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SAI4T8_1008170  Putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAI4T8_1008180  Putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SAI4T8_1008160  sdhC; Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
SAI4T8_1013710  Fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SAI4T8_1017540  mqo1; Probable malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
SAI4T8_1019480  mqo2; Probable malate:quinone oxidoreductase 2 [KO:K00116] [EC:1.1.5.4]
SAI4T8_1007920  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SAI4T8_1013130  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SAI4T8_1007760  Putative pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SAI4T8_1007770  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SAI4T8_1007780  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sauq00010  Glycolysis / Gluconeogenesis
sauq00053  Ascorbate and aldarate metabolism
sauq00061  Fatty acid biosynthesis
sauq00071  Fatty acid degradation
sauq00190  Oxidative phosphorylation
sauq00220  Arginine biosynthesis
sauq00250  Alanine, aspartate and glutamate metabolism
sauq00280  Valine, leucine and isoleucine degradation
sauq00350  Tyrosine metabolism
sauq00470  D-Amino acid metabolism
sauq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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