KEGG   PATHWAY: sauz00020
Entry
sauz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus aureus subsp. aureus Z172 (MRSA/VISA)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sauz00020  Citrate cycle (TCA cycle)
sauz00020

Module
sauz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sauz00020]
sauz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sauz00020]
sauz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sauz00020]
sauz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sauz00020]
sauz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sauz00020]
Other DBs
GO: 0006099
Organism
Staphylococcus aureus subsp. aureus Z172 (MRSA/VISA) [GN:sauz]
Gene
SAZ172_1706  citZ; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
SAZ172_1362  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SAZ172_1705  citC; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
SAZ172_1425  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SAZ172_1424  odhB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SAZ172_1035  pdhD; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
SAZ172_1533  bfmBC; Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAZ172_1293  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAZ172_1294  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAZ172_1250  Succinyl-CoA ligase (ADP-forming) alpha chain [KO:K01902] [EC:6.2.1.5]
SAZ172_1249  Succinyl-CoA ligase (ADP-forming) beta chain [KO:K01903] [EC:6.2.1.5]
SAZ172_1147  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAZ172_1148  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SAZ172_1146  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
SAZ172_1862  citG; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SAZ172_2469  mqo1; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SAZ172_2725  mqo2; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SAZ172_1053  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
SAZ172_1802  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SAZ172_1032  pdhA; Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
SAZ172_1033  pdhB; Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
SAZ172_1034  pdhC; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sauz00010  Glycolysis / Gluconeogenesis
sauz00053  Ascorbate and aldarate metabolism
sauz00061  Fatty acid biosynthesis
sauz00071  Fatty acid degradation
sauz00190  Oxidative phosphorylation
sauz00220  Arginine biosynthesis
sauz00250  Alanine, aspartate and glutamate metabolism
sauz00280  Valine, leucine and isoleucine degradation
sauz00350  Tyrosine metabolism
sauz00470  D-Amino acid metabolism
sauz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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