KEGG   PATHWAY: sbae00020
Entry
sbae00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Capillimicrobium parvum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbae00020  Citrate cycle (TCA cycle)
sbae00020

Module
sbae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbae00020]
sbae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbae00020]
sbae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbae00020]
sbae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbae00020]
sbae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbae00020]
Other DBs
GO: 0006099
Organism
Capillimicrobium parvum [GN:sbae]
Gene
DSM104329_00024  acoB_1; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [KO:K00162] [EC:1.2.4.1]
DSM104329_00297  aceF_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DSM104329_00304  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSM104329_00424  acn; Aconitate hydratase A [KO:K27802]
DSM104329_00495  aarA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
DSM104329_00944  sdhE; 8-methylmenaquinol:fumarate reductase membrane anchor subunit [KO:K00241]
DSM104329_00945  [KO:K00240] [EC:1.3.5.1]
DSM104329_00946  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSM104329_00953  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
DSM104329_00954  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSM104329_01507  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DSM104329_01508  aceF_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DSM104329_01509  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSM104329_01821  sucD_1; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DSM104329_01822  sucC_1; Succinate--CoA ligase [GDP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DSM104329_01827  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
DSM104329_01960  pdhC_3; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DSM104329_01977  pdhC_4; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DSM104329_01978  bfmBAB_5; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DSM104329_01979  acoA_7; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
DSM104329_02348  accC_2; Biotin carboxylase [KO:K01959] [EC:6.4.1.1]
DSM104329_02912  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSM104329_02913  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSM104329_03753  pdhC_6; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DSM104329_03754  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DSM104329_05318  sucC_2; Succinate--CoA ligase [GDP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DSM104329_05319  sucD_2; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DSM104329_05430  acoA_9; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
DSM104329_05587  citA; Putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
DSM104329_05635  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbae00010  Glycolysis / Gluconeogenesis
sbae00053  Ascorbate and aldarate metabolism
sbae00061  Fatty acid biosynthesis
sbae00071  Fatty acid degradation
sbae00190  Oxidative phosphorylation
sbae00220  Arginine biosynthesis
sbae00250  Alanine, aspartate and glutamate metabolism
sbae00280  Valine, leucine and isoleucine degradation
sbae00350  Tyrosine metabolism
sbae00470  D-Amino acid metabolism
sbae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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