KEGG   PATHWAY: seno00030
Entry
seno00030                   Pathway                                
Name
Pentose phosphate pathway - Salmonella enterica subsp. enterica serovar Enteritidis EC20090193
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
seno00030  Pentose phosphate pathway
seno00030

Module
seno_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:seno00030]
seno_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:seno00030]
seno_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:seno00030]
seno_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:seno00030]
seno_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:seno00030]
seno_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:seno00030]
Other DBs
GO: 0006098
Organism
Salmonella enterica subsp. enterica serovar Enteritidis EC20090193 [GN:seno]
Gene
AU37_20650  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AU37_05770  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AU37_03785  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
AU37_10505  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AU37_20020  epimerase [KO:K01783] [EC:5.1.3.1]
AU37_17075  ribulose phosphate epimerase [KO:K01783] [EC:5.1.3.1]
AU37_11750  transketolase [KO:K00615] [EC:2.2.1.1]
AU37_11755  carbohydrate degradation protein [KO:K00615] [EC:2.2.1.1]
AU37_12455  transketolase [KO:K00615] [EC:2.2.1.1]
AU37_14845  transketolase [KO:K00615] [EC:2.2.1.1]
AU37_00025  transaldolase [KO:K00616] [EC:2.2.1.2]
AU37_12450  transaldolase [KO:K00616] [EC:2.2.1.2]
AU37_14780  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
AU37_22355  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
AU37_19075  ribokinase [KO:K00852] [EC:2.7.1.15]
AU37_18615  ribokinase [KO:K00852] [EC:2.7.1.15]
AU37_22365  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AU37_03405  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AU37_06455  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AU37_05775  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
AU37_05780  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AU37_18515  4-hydroxy-2-ketovalerate aldolase [KO:K17463] [EC:4.1.2.14]
AU37_00865  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
AU37_17905  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AU37_21870  idnK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
AU37_17360  gntK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
AU37_17715  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
AU37_18540  PTS fructose transporter subunit IIA [KO:K17464] [EC:2.7.1.203]
AU37_18535  PTS sugar transporter [KO:K17465] [EC:2.7.1.203]
AU37_18530  PTS sorbose transporter subunit IIC [KO:K17466]
AU37_18525  PTS fructose transporter subunit IID [KO:K17467]
AU37_18520  selenocysteine synthase [KO:K17468] [EC:4.3.1.29]
AU37_10795  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
AU37_14805  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
AU37_21620  fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
AU37_20045  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
AU37_19930  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
AU37_08895  6-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
seno00010  Glycolysis / Gluconeogenesis
seno00040  Pentose and glucuronate interconversions
seno00052  Galactose metabolism
seno00230  Purine metabolism
seno00240  Pyrimidine metabolism
seno00340  Histidine metabolism
seno00630  Glyoxylate and dicarboxylate metabolism
seno00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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