KEGG   PATHWAY: sgri03430
Entry
sgri03430                   Pathway                                
Name
Mismatch repair - Serratia grimesii
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
sgri03430  Mismatch repair
sgri03430

Other DBs
GO: 0006298
Organism
Serratia grimesii [GN:sgri]
Gene
SGBXF1_00049  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
SGBXF1_00201  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
SGBXF1_00371  mutL; DNA mismatch repair protein MutL [KO:K03572]
SGBXF1_00508  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
SGBXF1_00590  holD; DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
SGBXF1_00762  mutS; DNA mismatch repair protein MutS [KO:K03555]
SGBXF1_00836  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
SGBXF1_00999  xseB; Exodeoxyribonuclease 7 small subunit [KO:K03602] [EC:3.1.11.6]
SGBXF1_01054  dnaX; DNA polymerase III subunit tau [KO:K02343] [EC:2.7.7.7]
SGBXF1_01132  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
SGBXF1_01794  holE_1; DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
SGBXF1_01926  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
SGBXF1_01957  exoX; Exodeoxyribonuclease 10 [KO:K10857] [EC:3.1.11.-]
SGBXF1_01963  holE_2; DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
SGBXF1_03251  holE_3; DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
SGBXF1_03252  sbcB; Exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
SGBXF1_03518  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
SGBXF1_03665  xseA; Exodeoxyribonuclease 7 large subunit [KO:K03601] [EC:3.1.11.6]
SGBXF1_03885  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
SGBXF1_03939  mutH; DNA mismatch repair protein MutH [KO:K03573]
SGBXF1_03994  recJ; Single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
SGBXF1_04386  ssb; Single-stranded DNA-binding protein [KO:K03111]
SGBXF1_04542  dam; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
SGBXF1_04760  ligB; DNA ligase B [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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