KEGG   PATHWAY: sheh03030
Entry
sheh03030                   Pathway                                
Name
DNA replication - Shewanella sp. H8
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sheh03030  DNA replication
sheh03030

Organism
Shewanella sp. H8 [GN:sheh]
Gene
ABIS04_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
ABIS04_03380  [KO:K03469] [EC:3.1.26.4]
ABIS04_03770  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
ABIS04_04530  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
ABIS04_07080  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
ABIS04_07430  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
ABIS04_07515  [KO:K02342] [EC:2.7.7.7]
ABIS04_08685  [KO:K02342] [EC:2.7.7.7]
ABIS04_10535  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
ABIS04_10540  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
ABIS04_10675  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
ABIS04_12650  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
ABIS04_12655  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
ABIS04_14585  [KO:K02339] [EC:2.7.7.7]
ABIS04_16450  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
ABIS04_17785  [KO:K03111]
ABIS04_19150  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
ABIS04_19600  [KO:K02342] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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