KEGG   PATHWAY: sks03030
Entry
sks03030                    Pathway                                
Name
DNA replication - Salinivibrio kushneri
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sks03030  DNA replication
sks03030

Organism
Salinivibrio kushneri [GN:sks]
Gene
FCN78_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
FCN78_01670  ssb; single-stranded DNA-binding protein [KO:K03111]
FCN78_01780  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
FCN78_02020  [KO:K02339] [EC:2.7.7.7]
FCN78_03320  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
FCN78_03325  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
FCN78_03465  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
FCN78_03470  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
FCN78_03705  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
FCN78_03850  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
FCN78_04505  [KO:K02342] [EC:2.7.7.7]
FCN78_04575  [KO:K02343] [EC:2.7.7.7]
FCN78_08210  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
FCN78_10565  [KO:K02344] [EC:2.7.7.7]
FCN78_11700  [KO:K02314] [EC:5.6.2.3]
FCN78_12120  [KO:K02342] [EC:2.7.7.7]
FCN78_12590  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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