KEGG   PATHWAY: smd00240
Entry
smd00240                    Pathway                                
Name
Pyrimidine metabolism - Sinorhizobium medicae
Class
Metabolism; Nucleotide metabolism
Pathway map
smd00240  Pyrimidine metabolism
smd00240

Module
smd_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:smd00240]
smd_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:smd00240]
Other DBs
GO: 0006220 0006213
Organism
Sinorhizobium medicae [GN:smd]
Gene
Smed_4563  protein of unknown function DUF201 [KO:K01955] [EC:6.3.5.5]
Smed_1257  carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
Smed_2229  carbamoyl-phosphate synthase, small subunit [KO:K01956] [EC:6.3.5.5]
Smed_0936  aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
Smed_0935  dihydroorotase, multifunctional complex type [KO:K01465] [EC:3.5.2.3]
Smed_0106  dihydroorotase, homodimeric type [KO:K01465] [EC:3.5.2.3]
Smed_0161  Dihydroorotate oxidase [KO:K00254] [EC:1.3.5.2]
Smed_0107  orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
Smed_3540  orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
Smed_1133  uridylate kinase [KO:K09903] [EC:2.7.4.22]
Smed_0775  Nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Smed_1097  MazG family protein [KO:K04765] [EC:3.6.1.9]
Smed_0212  maf protein [KO:K06287] [EC:3.6.1.-]
Smed_3210  maf protein [KO:K06287] [EC:3.6.1.-]
Smed_1069  CTP synthase [KO:K01937] [EC:6.3.4.2]
Smed_3457  cytidylate kinase [KO:K00945] [EC:2.7.4.25]
Smed_2690  5'-Nucleotidase domain protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
Smed_1168  stationary-phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Smed_3343  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
Smed_2645  metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
Smed_1524  Indigoidine synthase A family protein [KO:K16329] [EC:4.2.1.70]
Smed_3340  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
Smed_5333  N-isopropylammelide isopropylaminohydrolase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
Smed_4007  Amidohydrolase 3 [KO:K01485] [EC:3.5.4.1 3.5.4.21]
Smed_0134  2-deoxycytidine 5-triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
Smed_1233  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [KO:K00525] [EC:1.17.4.1]
Smed_0705  conserved hypothetical protein [KO:K06952] [EC:3.1.3.89]
Smed_1292  dTMP kinase [KO:K00943] [EC:2.7.4.9]
Smed_3554  deoxyuridine 5'-triphosphate nucleotidohydrolase Dut [KO:K01520] [EC:3.6.1.23]
Smed_3342  thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
Smed_2021  Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
Smed_2360  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K17722] [EC:1.3.1.1]
Smed_2361  dihydroorotate dehydrogenase family protein [KO:K17723] [EC:1.3.1.1]
Smed_2983  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
Smed_2367  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
Smed_2366  amidase, hydantoinase/carbamoylase family [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Smed_3660  isochorismatase hydrolase [KO:K09020] [EC:3.5.1.110]
Smed_5346  isochorismatase hydrolase [KO:K09020] [EC:3.5.1.110]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
smd00030  Pentose phosphate pathway
smd00220  Arginine biosynthesis
smd00250  Alanine, aspartate and glutamate metabolism
smd00280  Valine, leucine and isoleucine degradation
smd00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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