KEGG   PATHWAY: spen00630
Entry
spen00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Solanum pennellii
Class
Metabolism; Carbohydrate metabolism
Pathway map
spen00630  Glyoxylate and dicarboxylate metabolism
spen00630

Module
spen_M00012  Glyoxylate cycle [PATH:spen00630]
spen_M00532  Photorespiration [PATH:spen00630]
spen_M00621  Glycine cleavage system [PATH:spen00630]
Other DBs
GO: 0046487 0043648
Organism
Solanum pennellii [GN:spen]
Gene
107025868  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
107024319  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
107011100  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
107005763  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
107006622  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
107015269  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
107015270  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
107014498  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
107031106  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107015478  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
107001458  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107031532  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107012039  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
107014182  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107025677  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107005541  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107024591  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
107007656  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
107008212  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107025786  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107007130  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107026360  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
107015736  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
107020929  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
107014843  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
107012903  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X2 [KO:K11517] [EC:1.1.3.15]
107029033  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
107025828  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
107012987  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
107002311  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
107007063  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
107010222  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
107015553  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
107027947  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
107009771  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
107031282  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
107015104  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
107004123  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
107015970  phosphoglycolate phosphatase 2 isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
107004628  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
34925886  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
107014224  ribulose bisphosphate carboxylase small chain 2A, chloroplastic [KO:K01602] [EC:4.1.1.39]
107011350  ribulose bisphosphate carboxylase small chain 1, chloroplastic [KO:K01602] [EC:4.1.1.39]
107025405  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
107010325  ribulose bisphosphate carboxylase small chain 2C, chloroplastic [KO:K01602] [EC:4.1.1.39]
107010326  ribulose bisphosphate carboxylase small chain 2B, chloroplastic [KO:K01602] [EC:4.1.1.39]
107010327  ribulose bisphosphate carboxylase small chain 2C, chloroplastic [KO:K01602] [EC:4.1.1.39]
107007093  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
107020278  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
107028658  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
107013679  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
107018296  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
107019044  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
107002042  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
107004767  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
107028019  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
107020327  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
107007366  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
107010969  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
107007701  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
107007833  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
107027939  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
107011011  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
107020311  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
107007335  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107002080  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107020411  dihydrolipoyl dehydrogenase 1, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
107009145  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
107023420  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
107028767  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
107014459  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
107013660  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
107011544  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
107026897  formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
107023666  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
107011137  uncharacterized protein LOC107011137 isoform X1 [KO:K01455] [EC:3.5.1.49]
107014510  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
107023104  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
spen00010  Glycolysis / Gluconeogenesis
spen00020  Citrate cycle (TCA cycle)
spen00030  Pentose phosphate pathway
spen00053  Ascorbate and aldarate metabolism
spen00071  Fatty acid degradation
spen00230  Purine metabolism
spen00250  Alanine, aspartate and glutamate metabolism
spen00260  Glycine, serine and threonine metabolism
spen00620  Pyruvate metabolism
spen00710  Carbon fixation by Calvin cycle
spen00750  Vitamin B6 metabolism
spen00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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