KEGG   PATHWAY: spo00020
Entry
spo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Schizosaccharomyces pombe (fission yeast)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spo00020  Citrate cycle (TCA cycle)
spo00020

Module
spo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spo00020]
spo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spo00020]
spo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spo00020]
spo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spo00020]
Other DBs
GO: 0006099
Organism
Schizosaccharomyces pombe (fission yeast) [GN:spo]
Gene
2543283  cit1; citrate synthase Cit1 [KO:K01647] [EC:2.3.3.1]
2541811  acl2; ATP-citrate synthase subunit 2 [KO:K01648] [EC:2.3.3.8]
2539879  acl1; ATP citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
2541450  aco1; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
2542598  idp1; isocitrate dehydrogenase Idp1 [KO:K00031] [EC:1.1.1.42]
2541894  idh1; isocitrate dehydrogenase (NAD+) subunit 1 Idh1 [KO:K00030] [EC:1.1.1.41]
2541260  idh2; isocitrate dehydrogenase (NAD+) subunit 2 [KO:K00030] [EC:1.1.1.41]
2540991  kgd1; alpha-ketoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
2541170  kgd2; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
2543269  dld1; dihydrolipoamide dehydrogenase Dld1 [KO:K00382] [EC:1.8.1.4]
2542341  SPOM_SPAC16E8.17C; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
2539168  lsc2; succinate-CoA ligase beta subunit Lsc2 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
2541690  sdh1; succinate dehydrogenase Sdh1 [KO:K00234] [EC:1.3.5.1]
2542842  sdh2; succinate dehydrogenase iron-sulfur subunit protein [KO:K00235] [EC:1.3.5.1]
2539100  sdh3; succinate dehydrogenase cytochrome b subunit [KO:K00236]
2541292  tim18; TIM22 inner membrane protein import complex and succinate dehydrogenase (SDH) anchor subunit Tim18 [KO:K00237]
2539345  fum1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
2538766  mdh1; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
2539661  pyr1; pyruvate carboxylase Pyr1 [KO:K01958] [EC:6.4.1.1]
2541579  pda1; pyruvate dehydrogenase E1 component alpha subunit Pda1 [KO:K00161] [EC:1.2.4.1]
2540273  pdb1; pyruvate dehydrogenase E1 component beta subunit Pdb1 [KO:K00162] [EC:1.2.4.1]
2538797  lat1; dihydrolipoamide S-acetyltransferase E2 Lat1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spo00010  Glycolysis / Gluconeogenesis
spo00053  Ascorbate and aldarate metabolism
spo00061  Fatty acid biosynthesis
spo00062  Fatty acid elongation
spo00071  Fatty acid degradation
spo00190  Oxidative phosphorylation
spo00220  Arginine biosynthesis
spo00250  Alanine, aspartate and glutamate metabolism
spo00280  Valine, leucine and isoleucine degradation
spo00350  Tyrosine metabolism
spo00470  D-Amino acid metabolism
spo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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