KEGG   PATHWAY: ssck00020
Entry
ssck00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sporothrix schenckii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ssck00020  Citrate cycle (TCA cycle)
ssck00020

Module
ssck_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ssck00020]
ssck_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ssck00020]
ssck_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ssck00020]
ssck_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ssck00020]
ssck_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ssck00020]
Other DBs
GO: 0006099
Organism
Sporothrix schenckii [GN:ssck]
Gene
SPSK_09045  citrate synthase [KO:K01647] [EC:2.3.3.1]
SPSK_09168  citrate synthase [KO:K01647] [EC:2.3.3.1]
SPSK_02464  citrate synthase [KO:K01647] [EC:2.3.3.1]
SPSK_04085  ATP citrate (pro-S)-lyase [KO:K01648] [EC:2.3.3.8]
SPSK_04328  ATP citrate (pro-S)-lyase [KO:K01648] [EC:2.3.3.8]
SPSK_00414  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SPSK_09014  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SPSK_01714  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
SPSK_09281  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
SPSK_01410  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SPSK_00516  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
SPSK_00489  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SPSK_07522  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
SPSK_08680  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
SPSK_08941  succinyl-CoA synthetase beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
SPSK_08603  succinate dehydrogenase (ubiquinone) flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
SPSK_09529  succinate dehydrogenase (ubiquinone) iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
SPSK_09780  succinate dehydrogenase (ubiquinone) cytochrome b560 subunit [KO:K00236]
SPSK_00895  succinate dehydrogenase (ubiquinone) membrane anchor subunit [KO:K00237]
SPSK_09005  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SPSK_02491  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
SPSK_07596  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
SPSK_03872  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SPSK_02442  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SPSK_01733  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SPSK_06320  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SPSK_07465  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ssck00010  Glycolysis / Gluconeogenesis
ssck00053  Ascorbate and aldarate metabolism
ssck00061  Fatty acid biosynthesis
ssck00062  Fatty acid elongation
ssck00071  Fatty acid degradation
ssck00190  Oxidative phosphorylation
ssck00220  Arginine biosynthesis
ssck00250  Alanine, aspartate and glutamate metabolism
ssck00280  Valine, leucine and isoleucine degradation
ssck00350  Tyrosine metabolism
ssck00470  D-Amino acid metabolism
ssck00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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