KEGG   PATHWAY: stro00020
Entry
stro00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces sp. MOE7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stro00020  Citrate cycle (TCA cycle)
stro00020

Module
stro_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stro00020]
Other DBs
GO: 0006099
Organism
Streptomyces sp. MOE7 [GN:stro]
Gene
STRMOE7_28425  citrate synthase [KO:K01647] [EC:2.3.3.1]
STRMOE7_28430  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
STRMOE7_14335  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
STRMOE7_23440  citrate synthase [KO:K01647] [EC:2.3.3.1]
STRMOE7_07670  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
STRMOE7_26065  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
STRMOE7_11690  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STRMOE7_17895  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STRMOE7_17900  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STRMOE7_23735  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
STRMOE7_23730  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
STRMOE7_25070  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STRMOE7_11030  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STRMOE7_24095  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STRMOE7_25065  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STRMOE7_11035  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
STRMOE7_24090  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STRMOE7_11025  succinate dehydrogenase [KO:K00241]
STRMOE7_24105  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
STRMOE7_24100  succinate dehydrogenase [KO:K00242]
STRMOE7_24950  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
STRMOE7_24915  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
STRMOE7_24640  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
STRMOE7_12775  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
STRMOE7_11705  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stro00010  Glycolysis / Gluconeogenesis
stro00053  Ascorbate and aldarate metabolism
stro00061  Fatty acid biosynthesis
stro00071  Fatty acid degradation
stro00190  Oxidative phosphorylation
stro00220  Arginine biosynthesis
stro00250  Alanine, aspartate and glutamate metabolism
stro00280  Valine, leucine and isoleucine degradation
stro00350  Tyrosine metabolism
stro00470  D-Amino acid metabolism
stro00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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