KEGG   PATHWAY: stru03050
Entry
stru03050                   Pathway                                
Name
Proteasome - Salmo trutta (river trout)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
stru03050  Proteasome
stru03050

Other DBs
GO: 0000502
Organism
Salmo trutta (river trout) [GN:stru]
Gene
115170989  26S proteasome non-ATPase regulatory subunit 3-like [KO:K03033]
115196747  26S proteasome non-ATPase regulatory subunit 3-like [KO:K03033]
115164486  26S proteasome non-ATPase regulatory subunit 9-like [KO:K06693]
115178824  26S proteasome non-ATPase regulatory subunit 12-like [KO:K03035]
115208595  26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
115192096  26S proteasome non-ATPase regulatory subunit 11-like isoform X1 [KO:K03036]
115158466  26S proteasome non-ATPase regulatory subunit 11B-like [KO:K03036]
115170867  26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
115201051  26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
115150764  26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
115207662  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
115152105  26S proteasome non-ATPase regulatory subunit 7-like [KO:K03038]
115167278  26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
115203064  26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
115197277  26S proteasome non-ATPase regulatory subunit 7-like [KO:K03038]
115166718  26S proteasome non-ATPase regulatory subunit 13-like [KO:K03039]
115203600  26S proteasome non-ATPase regulatory subunit 13-like [KO:K03039]
115179358  26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
115196096  26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
115206721  psmd8; 26S proteasome non-ATPase regulatory subunit 8 isoform X1 [KO:K03031]
115174007  sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
115175516  26S proteasome complex subunit SEM1-like [KO:K10881]
115186843  26S proteasome non-ATPase regulatory subunit 4-like isoform X1 [KO:K03029]
115176088  26S proteasome non-ATPase regulatory subunit 4-like isoform X1 [KO:K03029]
115177450  26S proteasome non-ATPase regulatory subunit 4-like isoform X1 [KO:K03029]
115163623  26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
115206517  26S proteasome non-ATPase regulatory subunit 2-like [KO:K03028]
115157960  26S proteasome non-ATPase regulatory subunit 1-like [KO:K03032]
115151517  psmd1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
115168042  proteasomal ubiquitin receptor ADRM1-like [KO:K06691]
115168719  proteasomal ubiquitin receptor ADRM1 [KO:K06691]
115165701  proteasomal ubiquitin receptor ADRM1-like isoform X1 [KO:K06691]
115180253  26S proteasome regulatory subunit 7 [KO:K03061]
115199145  26S proteasome regulatory subunit 7 [KO:K03061]
115158410  26S proteasome regulatory subunit 4-like [KO:K03062]
115162138  psmc1; 26S proteasome regulatory subunit 4 [KO:K03062]
115172407  26S proteasome regulatory subunit 4 [KO:K03062]
115161973  psmc5; 26S proteasome regulatory subunit 8 [KO:K03066]
115200982  26S proteasome regulatory subunit 8-like [KO:K03066]
115174588  26S proteasome regulatory subunit 10B [KO:K03064]
115161325  26S proteasome regulatory subunit 10B-like [KO:K03064]
115167509  26S proteasome regulatory subunit 6A-B isoform X1 [KO:K03065]
115202889  26S proteasome regulatory subunit 6A-B-like isoform X1 [KO:K03065]
115177051  26S proteasome regulatory subunit 6B isoform X1 [KO:K03063]
115177490  26S proteasome regulatory subunit 6B-like [KO:K03063]
115149635  proteasome activator complex subunit 1-like [KO:K06696]
115195611  proteasome activator complex subunit 1-like [KO:K06696]
115149142  proteasome activator complex subunit 2-like [KO:K06697]
115195675  proteasome activator complex subunit 2-like [KO:K06697]
115158324  proteasome activator complex subunit 3-like isoform X1 [KO:K06698]
115171262  proteasome activator complex subunit 3-like isoform X1 [KO:K06698]
115201068  proteasome activator complex subunit 3-like [KO:K06698]
115199584  proteasome activator complex subunit 3-like [KO:K06698]
115152802  proteasome activator complex subunit 4A-like isoform X1 [KO:K06699]
115201556  proteasome activator complex subunit 4A-like isoform X1 [KO:K06699]
115174990  proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
115162128  proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
115163159  proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
115196046  proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
115206109  proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
115181389  proteasome subunit alpha type-2-like [KO:K02726] [EC:3.4.25.1]
115181390  proteasome subunit alpha type-2-like [KO:K02726] [EC:3.4.25.1]
115175585  proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
115166827  proteasome subunit alpha type-4-like [KO:K02728] [EC:3.4.25.1]
115203500  proteasome subunit alpha type-4-like [KO:K02728] [EC:3.4.25.1]
115197161  proteasome subunit alpha type-4 isoform X1 [KO:K02728] [EC:3.4.25.1]
115192308  proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
115168381  proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
115169656  proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
115158614  proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
115166159  proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
115157117  proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
115150675  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
115192806  proteasome subunit alpha type-1-like [KO:K02725] [EC:3.4.25.1]
115167089  proteasome subunit alpha type-1-like [KO:K02725] [EC:3.4.25.1]
115203238  proteasome subunit alpha type-1-like [KO:K02725] [EC:3.4.25.1]
115197072  proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
115162086  proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
115172345  proteasome subunit alpha type-3-like [KO:K02727] [EC:3.4.25.1]
115173551  proteasome subunit beta type-6-A like protein [KO:K02738] [EC:3.4.25.1]
115183248  proteasome subunit beta type-6-like [KO:K02738] [EC:3.4.25.1]
115175923  proteasome subunit beta type-6-B like protein [KO:K02738] [EC:3.4.25.1]
115154743  proteasome subunit beta type-6-like [KO:K02738] [EC:3.4.25.1]
115204340  proteasome subunit beta type-6-like [KO:K02738] [EC:3.4.25.1]
115173549  proteasome subunit beta type-7-like [KO:K02739] [EC:3.4.25.1]
115173569  proteasome subunit beta type-7-like [KO:K02739] [EC:3.4.25.1]
115175893  proteasome subunit beta type-7-like [KO:K02739] [EC:3.4.25.1]
115175921  proteasome subunit beta type-7-like [KO:K02739] [EC:3.4.25.1]
115160029  psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
115178397  proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
115208672  proteasome subunit beta type-3-like [KO:K02735] [EC:3.4.25.1]
115175970  proteasome subunit beta type-2-like [KO:K02734] [EC:3.4.25.1]
115173445  proteasome subunit beta type-2-like [KO:K02734] [EC:3.4.25.1]
115192410  proteasome subunit beta type-5-like [KO:K02737] [EC:3.4.25.1]
115158491  proteasome subunit beta type-5-like [KO:K02737] [EC:3.4.25.1]
115157330  proteasome subunit beta type-5-like [KO:K02737] [EC:3.4.25.1]
115152861  proteasome subunit beta type-1-B [KO:K02732] [EC:3.4.25.1]
115201470  proteasome subunit beta type-1-B-like [KO:K02732] [EC:3.4.25.1]
115173609  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
115175861  proteasome subunit beta type-4-like [KO:K02736] [EC:3.4.25.1]
115173550  proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
115175915  proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
115173547  proteasome subunit beta type-8-like [KO:K02740] [EC:3.4.25.1]
115175922  proteasome subunit beta type-8-like [KO:K02740] [EC:3.4.25.1]
115159010  proteasome subunit beta type-11-like [KO:K11598] [EC:3.4.25.1]
115157329  proteasome subunit beta type-5-like [KO:K11598] [EC:3.4.25.1]
115181896  interferon gamma 1-like [KO:K04687]
115184184  interferon gamma 1-like isoform X1 [KO:K04687]
115151111  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
115152465  proteasome maturation protein-like [KO:K11599]
115195383  proteasome maturation protein-like [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
stru04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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