KEGG   PATHWAY: supe00030
Entry
supe00030                   Pathway                                
Name
Pentose phosphate pathway - Superficieibacter sp. HKU1
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
supe00030  Pentose phosphate pathway
supe00030

Module
supe_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:supe00030]
supe_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:supe00030]
supe_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:supe00030]
supe_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:supe00030]
supe_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:supe00030]
supe_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:supe00030]
supe_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:supe00030]
Other DBs
GO: 0006098
Organism
Superficieibacter sp. HKU1 [GN:supe]
Gene
P0H77_00175  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
P0H77_00300  [KO:K17464] [EC:2.7.1.203]
P0H77_00305  [KO:K17465] [EC:2.7.1.203]
P0H77_00310  [KO:K17466]
P0H77_00315  [KO:K17467]
P0H77_00320  dgaE; D-glucosaminate-6-phosphate ammonia lyase [KO:K17468] [EC:4.3.1.29]
P0H77_00325  [KO:K17463] [EC:4.1.2.14]
P0H77_00560  [KO:K01624] [EC:4.1.2.13]
P0H77_00565  [KO:K01624] [EC:4.1.2.13]
P0H77_00710  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
P0H77_00830  [KO:K01053] [EC:3.1.1.17]
P0H77_01225  ghrB; glyoxylate/hydroxypyruvate reductase GhrB [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
P0H77_01235  [KO:K00874] [EC:2.7.1.45]
P0H77_01365  [KO:K00874] [EC:2.7.1.45]
P0H77_01455  [KO:K01783] [EC:5.1.3.1]
P0H77_01460  [KO:K08094] [EC:5.3.1.27]
P0H77_01800  gntK; gluconokinase [KO:K00851] [EC:2.7.1.12]
P0H77_02070  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
P0H77_02100  [KO:K01839] [EC:5.4.2.7]
P0H77_02250  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
P0H77_02950  fbp; class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
P0H77_03980  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
P0H77_03990  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
P0H77_04125  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
P0H77_04300  [KO:K06859] [EC:5.3.1.9]
P0H77_04305  [KO:K06859] [EC:5.3.1.9]
P0H77_04860  [KO:K00117] [EC:1.1.5.2]
P0H77_06955  [KO:K00615] [EC:2.2.1.1]
P0H77_06960  [KO:K00615] [EC:2.2.1.1]
P0H77_07530  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
P0H77_07910  pgl; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
P0H77_12020  pfkB; 6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
P0H77_12310  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
P0H77_12380  [KO:K01621] [EC:4.1.2.9 4.1.2.22]
P0H77_12855  kdgA; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
P0H77_12860  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
P0H77_12865  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
P0H77_13770  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
P0H77_14065  fbaB; class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
P0H77_14920  [KO:K00615] [EC:2.2.1.1]
P0H77_14925  [KO:K00615] [EC:2.2.1.1]
P0H77_15455  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
P0H77_15460  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
P0H77_17860  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
P0H77_17890  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
P0H77_17920  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
P0H77_17940  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
P0H77_18820  [KO:K00852] [EC:2.7.1.15]
P0H77_19370  [KO:K00117] [EC:1.1.5.2]
P0H77_20955  rpiB; bifunctional allose-6-phosphate isomerase/ribose-5-phosphate isomerase RpiB [KO:K01808] [EC:5.3.1.6]
P0H77_21285  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
P0H77_22065  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
P0H77_22360  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
P0H77_22950  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
supe00010  Glycolysis / Gluconeogenesis
supe00040  Pentose and glucuronate interconversions
supe00052  Galactose metabolism
supe00230  Purine metabolism
supe00240  Pyrimidine metabolism
supe00340  Histidine metabolism
supe00630  Glyoxylate and dicarboxylate metabolism
supe00750  Vitamin B6 metabolism
KO pathway
ko00030   

DBGET integrated database retrieval system