KEGG   PATHWAY: syr00010
Entry
syr00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Synechococcus sp. RCC307
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
syr00010  Glycolysis / Gluconeogenesis
syr00010

Module
syr_M00002  Glycolysis, core module involving three-carbon compounds [PATH:syr00010]
syr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:syr00010]
Other DBs
GO: 0006096 0006094
Organism
Synechococcus sp. RCC307 [GN:syr]
Gene
SynRCC307_0944  glk; Glucokinase [KO:K00845] [EC:2.7.1.2]
SynRCC307_0925  ROK family protein [KO:K25026] [EC:2.7.1.2]
SynRCC307_1347  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SynRCC307_1255  glpX; Fructose-1,6-biphosphatase / Sedoheptulose1, 7-biphosphate phosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
SynRCC307_2020  fbaB; Fructose-bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
SynRCC307_1493  cbbA; Fructose-1,6-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
SynRCC307_0974  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
SynRCC307_0028  gap1; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00150] [EC:1.2.1.59]
SynRCC307_2229  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
SynRCC307_1857  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
SynRCC307_2363  eno; Enolase [KO:K01689] [EC:4.2.1.11]
SynRCC307_1399  pykF; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
SynRCC307_1706  pdhA; Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
SynRCC307_1312  pdhB; Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
SynRCC307_1794  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SynRCC307_0615  lpdA; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SynRCC307_0455  Aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
SynRCC307_1345  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
SynRCC307_0402  pmg; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
syr00020  Citrate cycle (TCA cycle)
syr00030  Pentose phosphate pathway
syr00500  Starch and sucrose metabolism
syr00620  Pyruvate metabolism
syr00640  Propanoate metabolism
syr00710  Carbon fixation in photosynthetic organisms
KO pathway
ko00010   
LinkDB

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